Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0815
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06840.1 68416.m00811 expressed protein                             32   0.34 
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind...    30   1.8  
At2g31750.1 68415.m03877 UDP-glucoronosyl/UDP-glucosyl transfera...    28   5.6  
At2g13840.1 68415.m01532 PHP domain-containing protein contains ...    28   5.6  
At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    28   5.6  
At2g27980.1 68415.m03391 expressed protein                             27   9.8  

>At3g06840.1 68416.m00811 expressed protein
          Length = 187

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = +1

Query: 214 IHGTNSFLNTTPSKPSCFEKHAGCVPRRRSVIDIQREALRELNKKSNGRNRATDGPLTAT 393
           I G+N+   TT SKPS         P R+  + I   +LRELN +   R   +  P+   
Sbjct: 127 ISGSNTPYRTTTSKPSSGPIAGTLTPARKGDVAIPYLSLRELNMEQPQRISISSSPIYLV 186

Query: 394 T 396
           T
Sbjct: 187 T 187


>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 708

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 217 HGTNSFLNTTPSKPSCFEKHAGCVPRRRSVIDIQREALRELNKKSNG 357
           HG + F  +  S PS F      +P + ++ +   + +REL   S G
Sbjct: 292 HGKSVFNGSPVSLPSFFSSFGRPIPEKENITEFALDVIRELEGSSEG 338


>At2g31750.1 68415.m03877 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 159 PTPSAIPQLWEKLHENMSNTWNEFVSEYDPVEALVL*KAC 278
           P+    P  + K  EN+S + +E +S  DP    V+  +C
Sbjct: 77  PSTDTSPDYFAKFQENVSRSLSELISSMDPKPNAVVYDSC 116


>At2g13840.1 68415.m01532 PHP domain-containing protein contains
           Pfam PF02231: PHP domain N-terminal region and Pfam
           PF02811: PHP domain C-terminal region; identical to
           Protein trpH. (Swiss-Prot:O54453) [Salmonella
           typhimurium]
          Length = 434

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -2

Query: 285 APGMLFKARGLRRGRIQKRIRSMYSTYFHEAFP-----TIEVWQKALEIISLKGFVVYIL 121
           APG +  AR L      + +R  ++ Y H+  P     T  + ++A+++I   G V  + 
Sbjct: 205 APGRMHVARALLEAGYVENLRQAFTKYLHDGGPAYATGTEPMAEEAVKLICKTGGVAVLA 264

Query: 120 EPFYL 106
            P+ L
Sbjct: 265 HPWAL 269


>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 345 LVEFSQSLTLDINNRPATWNAPGMLFKARG--LRRGRIQKRIRSM 217
           L+   ++L  + NN  + WN P  LF+ RG   R   + K + S+
Sbjct: 527 LLSLCETLFPNDNNHNSVWNGPHSLFRRRGGSNRSSALHKAVESL 571


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 256 PSCFEKHAGCVPRRR 300
           PS FE HAGC  RR+
Sbjct: 629 PSTFEAHAGCASRRK 643


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,640,100
Number of Sequences: 28952
Number of extensions: 280862
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)