Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0814
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 102 3e-22
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 99 1e-21
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 85 4e-17
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 82 4e-16
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 66 3e-11
At1g73210.2 68414.m08473 expressed protein 29 3.9
At1g73210.1 68414.m08472 expressed protein 29 3.9
At1g67570.1 68414.m07698 expressed protein 28 5.2
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 28 6.8
At5g65620.1 68418.m08255 peptidase M3 family protein / thimet ol... 27 9.0
At4g33920.1 68417.m04813 protein phosphatase 2C family protein /... 27 9.0
At4g27460.1 68417.m03946 CBS domain-containing protein 27 9.0
At3g61800.1 68416.m06935 expressed protein 27 9.0
At2g33820.1 68415.m04149 mitochondrial substrate carrier family ... 27 9.0
At1g21700.1 68414.m02717 SWIRM domain-containing protein / DNA-b... 27 9.0
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 102 bits (244), Expect = 3e-22
Identities = 53/97 (54%), Positives = 65/97 (67%)
Frame = +3
Query: 234 KEEKTIKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSV 413
KE K K +LGV +PK+G+ I EA +I C V E+LRG+R HF IK L
Sbjct: 87 KEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFVHELLRGVRQHFDRFIKDLKPGDLEK 146
Query: 414 AQLGLGHSYSRARVKFNVHRVDNMIIQSIALLINLTK 524
AQLGL HSYSRA+VKFNV+RVDNM+IQ+I +L L K
Sbjct: 147 AQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDK 183
Score = 87.0 bits (206), Expect = 1e-17
Identities = 37/62 (59%), Positives = 48/62 (77%)
Frame = +2
Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEIL 688
D LDKD+N+F+MR+REWYS+HFPELV IV +N+LY K ++ I D+ L EE + LTE L
Sbjct: 179 DTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKIIVDKSKLSEEHIPMLTEAL 238
Query: 689 GD 694
GD
Sbjct: 239 GD 240
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/81 (45%), Positives = 48/81 (59%)
Frame = +1
Query: 4 EHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAVS 183
E +G+ LF +E+ V SV+DL RF VV L AF P +SA+ AL INAVS
Sbjct: 8 ESPSGYGLFEGHGSDEIGQNTEAVRSSVSDLSRFGRVVQLTAFHPFQSALDALNQINAVS 67
Query: 184 EGILPEDLNLFLEGGLPKRKK 246
EG + ++L FLE LPK K+
Sbjct: 68 EGYMSDELRSFLELNLPKVKE 88
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 99 bits (238), Expect = 1e-21
Identities = 52/97 (53%), Positives = 65/97 (67%)
Frame = +3
Query: 234 KEEKTIKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSV 413
KE K K +LG+ +PKLG+ I EA +I C V E+LRG+R HF IK L
Sbjct: 87 KEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLELLRGVRQHFDRFIKDLKPGDLEK 146
Query: 414 AQLGLGHSYSRARVKFNVHRVDNMIIQSIALLINLTK 524
+QLGL HSYSRA+VKFNV+RVDNM+IQ+I +L L K
Sbjct: 147 SQLGLAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDK 183
Score = 86.6 bits (205), Expect = 1e-17
Identities = 35/62 (56%), Positives = 49/62 (79%)
Frame = +2
Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDRKTLCEESLEPLTEIL 688
D LDKD+N+F+MR+REWYS+HFPELV IV +N+LY + ++ I D+ L E+ + LTE+L
Sbjct: 179 DTLDKDINSFAMRVREWYSWHFPELVKIVNDNYLYARVSKMIDDKSKLTEDHIPMLTEVL 238
Query: 689 GD 694
GD
Sbjct: 239 GD 240
Score = 76.2 bits (179), Expect = 2e-14
Identities = 38/82 (46%), Positives = 52/82 (63%)
Frame = +1
Query: 1 FEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAV 180
+E S+G+ LF V +E+ V SV+DL RF VV L AF P +SA+ AL +NAV
Sbjct: 7 YESSSGYGLFEVHGLDEIGQNTEAVRTSVSDLSRFGRVVQLTAFHPFESALDALNQVNAV 66
Query: 181 SEGILPEDLNLFLEGGLPKRKK 246
SEG++ ++L FLE LPK K+
Sbjct: 67 SEGVMTDELRSFLELNLPKVKE 88
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 85.0 bits (201), Expect = 4e-17
Identities = 45/91 (49%), Positives = 57/91 (62%)
Frame = +3
Query: 258 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLGHS 437
TL V D KLG I E L+I C H AV E+LRG+R F LI GL + + LGL HS
Sbjct: 85 TLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQFTELISGLGDQDLAPMSLGLSHS 144
Query: 438 YSRARVKFNVHRVDNMIIQSIALLINLTKML 530
+R ++KF+ +VD MIIQ+I LL +L K L
Sbjct: 145 LARYKLKFSSDKVDTMIIQAIGLLDDLDKEL 175
Score = 62.1 bits (144), Expect = 3e-10
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +2
Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDR 643
D LDK++NT++MR+REWY +HFPEL I+ +N LY K + + +R
Sbjct: 169 DDLDKELNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNR 213
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +1
Query: 1 FEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAV 180
+E +AGFALF+V + ++A +E T +V L AF+ + ALE + +
Sbjct: 6 YETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAVAKL 64
Query: 181 SEGILPEDLNLFLE 222
EG + L FL+
Sbjct: 65 LEGAPSKGLRKFLK 78
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 81.8 bits (193), Expect = 4e-16
Identities = 45/91 (49%), Positives = 55/91 (60%)
Frame = +3
Query: 258 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLGHS 437
TL V D KLG I E L+I C H AV E+LRGIR LI GL + LGL HS
Sbjct: 84 TLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGLGDQDLGPMSLGLSHS 143
Query: 438 YSRARVKFNVHRVDNMIIQSIALLINLTKML 530
+R ++KF+ +VD MIIQ+I LL +L K L
Sbjct: 144 LARYKLKFSSDKVDTMIIQAIGLLDDLDKEL 174
Score = 61.3 bits (142), Expect = 6e-10
Identities = 23/45 (51%), Positives = 34/45 (75%)
Frame = +2
Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDR 643
D LDK++NT++MR+REW+ +HFPEL IV +N LY K + + +R
Sbjct: 168 DDLDKELNTYAMRVREWFGWHFPELAKIVQDNILYAKAVKLMGNR 212
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +1
Query: 1 FEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENINAV 180
FE GFA+F+V +L+ + + + + +V L+AF + ALE + +
Sbjct: 5 FETPGGFAIFKVLNEGKLSN-VEDLGNEFSTAKLARKMVKLVAFDKFDNTAEALEAVAKL 63
Query: 181 SEGILPEDLNLFLE 222
EG + L FL+
Sbjct: 64 LEGTPSKGLRKFLK 77
>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 445
Score = 65.7 bits (153), Expect = 3e-11
Identities = 38/90 (42%), Positives = 51/90 (56%)
Frame = +3
Query: 261 LGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLGHSY 440
L V DPKLG I+E L+I+C H AV E+LRG+R L+ GL + L L H
Sbjct: 57 LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGLDDNDLAPVSLELSHIL 116
Query: 441 SRARVKFNVHRVDNMIIQSIALLINLTKML 530
+R ++K + MII SI+LL +L K L
Sbjct: 117 ARYKLKITSDK--TMIILSISLLDDLDKEL 144
Score = 48.4 bits (110), Expect = 5e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 509 DQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTKCAEFIKDR 643
D LDK++NT++ + E Y HFPEL +IV +N LY K + + +R
Sbjct: 138 DDLDKELNTYTTSVCELYGLHFPELANIVQDNILYAKVVKLMGNR 182
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 363 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 259
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 205
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 363 NVCLSKSPGLLLYACTEFPGPR*WLLLAWDPVHRV 259
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDM-SPASWMAVAWYPIYHI 207
>At1g67570.1 68414.m07698 expressed protein
Length = 456
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Frame = +2
Query: 443 TSSCQVQCSPSGQH-----DHTINSPADQLDKDVNTFSMRIREWYSYHFPELVSI 592
T S Q++ SPSG H + I+ P + D DV + +R + FP +S+
Sbjct: 346 TDSTQIRASPSGVHLEATTNPPISFPISRSDSDVESMDHYMRMPVTNQFPSYMSM 400
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +1
Query: 358 YVITSTRSSKALPSKHAVWHSLVLATHTHELVSSSMFTEW 477
YV ++ A PSK V+H LVL T + ++ M EW
Sbjct: 791 YVHPNSGLFGASPSKWLVYHELVLTTKEYMRHTTEMKPEW 830
>At5g65620.1 68418.m08255 peptidase M3 family protein / thimet
oligopeptidase family protein similar to SP|P27237
Oligopeptidase A (EC 3.4.24.70) {Salmonella
typhimurium}; contains Pfam profile PF01432: Peptidase
family M3
Length = 791
Score = 27.5 bits (58), Expect = 9.0
Identities = 24/97 (24%), Positives = 41/97 (42%)
Frame = +1
Query: 184 EGILPEDLNLFLEGGLPKRKKRSNAHSVYWIPS*EQPSARPWKFSARIQEQSRRF*EAYV 363
EG+ P L LF + + K + + A + WI + + PS P A+ + AY+
Sbjct: 282 EGLPPSALGLFAQAAVSKGHENATAENGPWIITLDAPSYLPVMQHAKNRALREEVYRAYL 341
Query: 364 ITSTRSSKALPSKHAVWHSLVLATHTHELVSSSMFTE 474
S SS L + + L L +L+ + + E
Sbjct: 342 --SRASSGDLDNTAIIDQILKLRLEKAKLLGYNNYAE 376
>At4g33920.1 68417.m04813 protein phosphatase 2C family protein /
PP2C family protein similar to Ser/Thr protein
phosphatase 2C (PP2C6) (GI:15020818) [Arabidopsis
thaliana]; similar to protein phosphatase 2C
(GI:3608412) [Mesembryanthemum crystallinum]; contains
Pfam PF00481 : Protein phosphatase 2C domain
Length = 380
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 264 GVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFH 374
G+ + AA+ EA + + G + +I +GIR HFH
Sbjct: 292 GIARRLVRAALEEAAKKREMRYGDIKKIAKGIRRHFH 328
>At4g27460.1 68417.m03946 CBS domain-containing protein
Length = 391
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 52 LAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSA---IVALENINAVSEGILPED 204
+AAF P S++DL N+ T++A H SA + A+ N AV + D
Sbjct: 172 IAAFSPLPAMSLSDLGVINSTHTVVAVDYHSSASAVVSAVSNALAVQTSVAVVD 225
>At3g61800.1 68416.m06935 expressed protein
Length = 664
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +3
Query: 240 EKTIKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTL 398
EK K T +DP+L AI + + + L + H HS ++ LTL
Sbjct: 16 EKATKSTAQEVDPRLLKAIKSIVRYSDSEVRLSSQTLMELMRHNHSQVRYLTL 68
>At2g33820.1 68415.m04149 mitochondrial substrate carrier family
protein (BAC1) contains Pfam profile: PF00153
mitochondrial carrier protein
Length = 311
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 297 SEALEIQCTHTGAVPEILRGIRYHFHSLIKGLTLKACSVAQLGLG 431
S L +CT + +RYH HS ++ LK + +G+G
Sbjct: 180 SATLLRECTGNAVFFTVYEYLRYHIHSRLEDSKLKDGYLVDMGIG 224
>At1g21700.1 68414.m02717 SWIRM domain-containing protein /
DNA-binding family protein contains similarity to
SWI/SNF complex 170 KDa subunit [Homo sapiens]
gi|1549241|gb|AAC50694; contains Pfam domain PF04433:
SWIRM domain, PF00249: Myb-like DNA-binding domain
Length = 807
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 73 VEESVTDLQRFNAVVTLIAFQPHKS--AIVALENINAVSE 186
VE+S + + F AVV + +PH S A+VA E + E
Sbjct: 74 VEDSGSRISDFPAVVKRVVIRPHASVMAVVAAERAGLIGE 113
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,774
Number of Sequences: 28952
Number of extensions: 348418
Number of successful extensions: 906
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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