Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0810
         (665 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13070.1 68418.m01498 MSF1-like family protein similar to px1...    44   7e-05
At2g35150.1 68415.m04311 phosphate-responsive 1 family protein s...    30   1.6  
At4g22790.1 68417.m03289 MATE efflux family protein contains Pfa...    29   3.7  

>At5g13070.1 68418.m01498 MSF1-like family protein similar to px19
           [Gallus gallus] GI:969170; contains Pfam profile
           PF04707: MSF1-like conserved region
          Length = 183

 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = +3

Query: 108 MKIWTSEHTFNHPWETVAQAAWRKYPNPMNPAVIG----TDVVERKV 236
           +K +  EH + HPWE V+ A+WRK+ +P N  ++      D + RK+
Sbjct: 2   VKAYRQEHVYKHPWERVSAASWRKFADPENKRILSHILEVDTLNRKL 48



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +2

Query: 287 PRWAQALIGTAKICYASEISEVNPIQRQMTLKTTNLTFCHYIAVDETVRYTPHPSD-SSK 463
           P +   +IG   IC+  E + V+   R M L T N++   +I V+E +RY PHP + S+ 
Sbjct: 68  PWFLHRIIGQ-DICHCVESTVVDGKSRSMQLTTKNISLKKFIEVEERIRYDPHPDNPSAW 126

Query: 464 TLLKQE 481
           T+  QE
Sbjct: 127 TVCSQE 132


>At2g35150.1 68415.m04311 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 323

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 487 SHCTRCAFSSYMEDLLTNKISLNAGKGRQAIEWVIGKFDTEIKELASSAC 636
           SH TR +  S +   LT+K+ LNA  G   +  V+   D E++E   + C
Sbjct: 122 SHLTRFSVQSVIRTALTSKLPLNAVNG---LYLVLTSDDVEMQEFCRAIC 168


>At4g22790.1 68417.m03289 MATE efflux family protein contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 491

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 200 WIHRIRIFSPCCLSNCFPW 144
           W+  I++  PCCL+ C  W
Sbjct: 253 WLTLIKLSGPCCLTVCLEW 271


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,339
Number of Sequences: 28952
Number of extensions: 287995
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)