Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0809
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative stron...   107   6e-24
At1g53240.1 68414.m06033 malate dehydrogenase [NAD], mitochondri...    32   0.45 
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    30   1.4  
At3g15020.1 68416.m01900 malate dehydrogenase [NAD], mitochondri...    29   2.4  
At4g00160.1 68417.m00016 F-box family protein contains F-box dom...    29   3.1  
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in...    29   3.1  
At4g21865.1 68417.m03162 expressed protein                             29   4.1  
At4g31530.1 68417.m04477 expressed protein                             28   5.5  
At1g51460.1 68414.m05792 ABC transporter family protein similar ...    28   7.2  
At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,...    27   9.6  
At1g77720.1 68414.m09049 protein kinase family protein contains ...    27   9.6  

>At4g17260.1 68417.m02595 L-lactate dehydrogenase, putative strong
           similarity to L-lactate dehydrogenase from Lycopersicon
           esculentum (GI:1620970, GI:1620972), Hordeum vulgare
           (SP|P22988, SP|P22989); contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 353

 Score =  107 bits (258), Expect = 6e-24
 Identities = 47/72 (65%), Positives = 61/72 (84%)
 Frame = +3

Query: 510 SRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTN 689
           SRL+L+QRN  + + IIP L K SPD+IL+I SNPVD+LTYV WK+SG P +RV+GSGTN
Sbjct: 125 SRLNLLQRNVALFRHIIPPLAKASPDSILIIVSNPVDVLTYVAWKLSGFPVNRVLGSGTN 184

Query: 690 LDSARFRYLLSD 725
           LDS+RFR+L++D
Sbjct: 185 LDSSRFRFLIAD 196



 Score =  107 bits (257), Expect = 7e-24
 Identities = 48/84 (57%), Positives = 65/84 (77%)
 Frame = +1

Query: 259 SKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSS 438
           +KV++VGVG VGMA A ++LTQ++ + IALVD   DKL+GEM+DLQH +AF+   KI +S
Sbjct: 41  TKVSVVGVGNVGMAIAQTILTQDLADEIALVDAKPDKLRGEMLDLQHAAAFLPRTKITAS 100

Query: 439 TDYSITAGSKICVVTAGVRQREGD 510
            DY +TAGS +C+VTAG RQ  G+
Sbjct: 101 VDYEVTAGSDLCIVTAGARQNPGE 124


>At1g53240.1 68414.m06033 malate dehydrogenase [NAD], mitochondrial
           identical to mitochondrial NAD-dependent malate
           dehydrogenase GI:3929649 SP|Q9ZP06 from [Arabidopsis
           thaliana]; contains InterPro entry IPR001236:
           Lactate/malate dehydrogenase
          Length = 341

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 510 SRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYVT---WKISGLPKHRVIGS 680
           +R DL   N  ++K +   + KY P  ++ + SNPV+    +    +K +G+   + +  
Sbjct: 114 TRDDLFNINAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFG 173

Query: 681 GTNLDSARFR 710
            T LD  R R
Sbjct: 174 VTTLDVVRAR 183


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/96 (23%), Positives = 40/96 (41%)
 Frame = +1

Query: 166 KQHQRALRELPQDGVPEEAVPARAREGGRNWSKVTIVGVGQVGMAAAFSMLTQNVTNNIA 345
           K+  RA R LPQ   PE+ + A+   G  N+ K T     +    +  + L +       
Sbjct: 25  KKRPRASR-LPQPTTPEKQIVAKVTGGSPNYMKGTRSSEARRQSQSVQAGLDKKSQTGKK 83

Query: 346 LVDMMADKLKGEMMDLQHGSAFMRNAKIQSSTDYSI 453
           L     +K +     L+ G +F R+ +I    D ++
Sbjct: 84  LDSCSREKKQSSSRSLKKGQSFKRSGRIGRCWDANV 119


>At3g15020.1 68416.m01900 malate dehydrogenase [NAD], mitochondrial,
           putative similar to mitochondrial NAD-dependent malate
           dehydrogenase GB:CAA10320 SP|Q9ZP06 [Arabidopsis
           thaliana]; contains InterPro entry IPR001236:
           Lactate/malate dehydrogenase
          Length = 341

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 510 SRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVDILTYVT---WKISGLPKHRVIGS 680
           +R DL   N  ++K +   + KY P  ++ + SNPV+    +    +K +G    + +  
Sbjct: 114 TRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFG 173

Query: 681 GTNLDSARFR 710
            T LD  R R
Sbjct: 174 VTTLDVVRAR 183


>At4g00160.1 68417.m00016 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 453

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = -1

Query: 633 HTSEYPRGYWRSPILCPDCTLSAAGLFV*EHRCFSARDRDEI-TFALSN 490
           H +  P G W  P   P+C LS    FV     +   +  EI T+ L N
Sbjct: 347 HKNGLPGGKWNEPKYVPECLLSHLETFVWRRFDWGREEEKEIATYILKN 395


>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
           interacting partner 6 [Arabidopsis thaliana]
           GI:10716957; contains Pfam profile PF00646: F-box domain
          Length = 373

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -2

Query: 689 VSAGPDDAVLGQPANLPRNIRQNIHGVTGDHQYCVRT-VLYQLRDYLFKN 543
           +S  PD+ VL   A +PR   +NI  V+   +  VRT  LY++R  L K+
Sbjct: 11  LSCLPDEMVLNCLARVPRRYYENISCVSVRLRSLVRTPELYRMRSLLHKD 60


>At4g21865.1 68417.m03162 expressed protein 
          Length = 154

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 135 PDRSVLIGNRKQNEQNKNKSKMNS*HTKLNMKDNTSQINNVH 10
           PD   +IGN    E+ K K  + S   K ++K   SQ+ NV+
Sbjct: 94  PDNDAMIGNMNMIEERKAKKGLKS---KDHIKSRASQLKNVN 132


>At4g31530.1 68417.m04477 expressed protein
          Length = 324

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 3/101 (2%)
 Frame = +1

Query: 196 PQDGVPEEAVPARAREGGRNWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDM-MADKL 372
           P     EEAV         +   + + G G VG     S+L +N+ + + L D+  A KL
Sbjct: 54  PVQAFTEEAVDTSDLASSSSKLVLVVGGTGGVGQLVVASLLKRNIRSRLLLRDLDKATKL 113

Query: 373 KGEM--MDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAG 489
            G+     LQ      RNA+     D S+  G    + T G
Sbjct: 114 FGKQDEYSLQVVKGDTRNAE---DLDPSMFEGVTHVICTTG 151


>At1g51460.1 68414.m05792 ABC transporter family protein similar to
           SP|Q9UNQ0 ATP-binding cassette, sub-family G, member 2
           (Placenta-specific ATP- binding cassette transporter)
           (Breast cancer resistance protein) {Homo sapiens};
           contains Pfam profile PF00005: ABC transporter
          Length = 678

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 573 KYSPDTILVIASNPVDILTYVTWKISGLPKHRVIG 677
           ++ PD  +V    PV  + Y  W + G  K+ +IG
Sbjct: 535 RFFPDLPMVFWRYPVSYINYGAWALQGAYKNEMIG 569


>At5g53460.1 68418.m06644 glutamate synthase [NADH], chloroplast,
            putative similar to SP|Q03460 Glutamate synthase [NADH],
            chloroplast precursor (EC 1.4.1.14) (NADH- GOGAT)
            {Medicago sativa}
          Length = 2208

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 250  RNWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKI 429
            R   KV I+G G  G+AAA  +   N   ++  V   +D++ G MM   +G   M+  KI
Sbjct: 1843 RTGKKVAIIGSGPAGLAAADQL---NKMGHLVTVYERSDRIGGLMM---YGVPNMKTDKI 1896


>At1g77720.1 68414.m09049 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 777

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
 Frame = +1

Query: 136 QVLNNI*DGDKQHQRALRELPQDGVPEEAVPARAREGGRNWSKVTIVG-----VGQVGMA 300
           ++L ++    K+H R L ++    +      A  R+  RN   VT  G     V  +  +
Sbjct: 40  ELLRHLQAAFKRH-RPLSKMQTTSIGPRRSVAPQRQASRNTRLVTAEGQRSQDVVTLSQS 98

Query: 301 AAFSMLTQNVTNNIALVDMMAD 366
            A + LTQ+ TNN+A+  +  +
Sbjct: 99  LAANTLTQDTTNNLAITSVAGE 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,403
Number of Sequences: 28952
Number of extensions: 307895
Number of successful extensions: 946
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)