Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0808
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12290.1 68418.m01445 expressed protein similarity to NCA2 pr...    30   1.8  
At1g43680.1 68414.m05018 hypothetical protein                          28   7.2  
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro...    25   8.1  

>At5g12290.1 68418.m01445 expressed protein similarity to NCA2
           protein, yeast, PIR:S54389~Contains 'Homeobox' domain
           signature and profile AA305-328
          Length = 602

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 114 FRLWVLKHGQLMTSSEVSAGWSHSASSLICS 206
           F +W+L+H  LM SS++   W H A     S
Sbjct: 315 FSIWLLRHSSLMGSSDIE-NWVHDAKEATMS 344


>At1g43680.1 68414.m05018 hypothetical protein
          Length = 247

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 422 NLFINWIKYNNTKNSRV-LFS-LHEYPKITQN*IRASNFPH 306
           N    W +  N++NS +  +S LH++P ++ N   A N PH
Sbjct: 135 NSLNRWDQEINSQNSNISTYSPLHDFPVVSWNFYTAGNLPH 175


>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 453

 Score = 25.4 bits (53), Expect(2) = 8.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 442 FTGIQMVHHYLMPS*ILVLPFCE 510
           FT I  + HY+ P   +VLP+ E
Sbjct: 180 FTEISPLPHYIFPEQYMVLPYLE 202



 Score = 20.6 bits (41), Expect(2) = 8.1
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +1

Query: 508 ELFILENKTRNFNI 549
           +LF+  N+TR++N+
Sbjct: 224 DLFLAFNRTRSYNV 237


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,493,348
Number of Sequences: 28952
Number of extensions: 353729
Number of successful extensions: 844
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)