Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0806
(795 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g22140.1 68415.m02630 expressed protein ; expression supporte... 32 0.38
At3g28770.1 68416.m03591 expressed protein 32 0.50
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 31 0.88
At5g06700.1 68418.m00757 expressed protein strong similarity to ... 31 1.2
At1g22000.1 68414.m02752 F-box family protein contains F-box dom... 31 1.2
At1g17910.1 68414.m02217 wall-associated kinase, putative contai... 30 2.0
At5g41440.1 68418.m05033 zinc finger (C3HC4-type RING finger) fa... 29 4.7
At2g35940.2 68415.m04412 homeodomain-containing protein contains... 29 4.7
At2g35940.1 68415.m04411 homeodomain-containing protein contains... 29 4.7
At5g60130.1 68418.m07538 transcriptional factor B3 family protei... 28 8.2
At3g25440.1 68416.m03163 group II intron splicing factor CRS1-re... 28 8.2
At3g08970.1 68416.m01048 DNAJ heat shock N-terminal domain-conta... 28 8.2
At2g31620.1 68415.m03863 receptor-like protein kinase-related co... 28 8.2
At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containi... 28 8.2
At1g13600.1 68414.m01595 bZIP transcription factor family protei... 28 8.2
>At2g22140.1 68415.m02630 expressed protein ; expression supported
by MPSS
Length = 506
Score = 32.3 bits (70), Expect = 0.38
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = +3
Query: 528 SCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIV 707
S ++ + + E KN + ++ + + +E + D T+ +E S ND E+V
Sbjct: 91 SLDSEFEDSPRPETSKKNESVLAGLREPRFGLEAETNDDTSWMHEVSFRSSPTNDTIEVV 150
Query: 708 SVNEKEDDSNVKCG 749
S EKED S K G
Sbjct: 151 SDQEKEDISVEKIG 164
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 31.9 bits (69), Expect = 0.50
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 8 KLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKND 187
K D+SV TN+ S KR + + + +N I +NK +A+S K + D
Sbjct: 612 KDDESVGAKTNNETSLEEKREQTQKGHDNSINSKIVDNKGGNADS-----NKEKEVHVGD 666
Query: 188 STN-NVPQFQLDAVSPIQKKR 247
STN N + + D S ++ K+
Sbjct: 667 STNDNNMESKEDTKSEVEVKK 687
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 5 KKLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKN 184
KK DKSV+ TND KR ++G + +EN +N + D+ + + N
Sbjct: 566 KKNDKSVEVTTNDGDHTKEKREETQGNNGESVK---NENLENKEDKKELKDDESVGAKTN 622
Query: 185 DSTN 196
+ T+
Sbjct: 623 NETS 626
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/86 (25%), Positives = 40/86 (46%)
Frame = +3
Query: 492 QKETEVGGIINNSCNNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLV 671
+KE VG N++ SK+ T SE+ K N S + K S++ N
Sbjct: 659 EKEVHVGDSTNDNNMESKE-DTKSEVEVKKNDGSSEKGEEGKENNKDSMEDKKLEN---- 713
Query: 672 PKSERNDATEIVSVNEKEDDSNVKCG 749
K + D+ + SV++K++++ + G
Sbjct: 714 -KESQTDSKDDKSVDDKQEEAQIYGG 738
>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
very low similarity to SP|Q40863 Late embryogenesis
abundant protein EMB8 from Picea glauca; contains Pfam
profile PF02517 CAAX amino terminal protease family
protein
Length = 1805
Score = 31.1 bits (67), Expect = 0.88
Identities = 18/71 (25%), Positives = 29/71 (40%)
Frame = +2
Query: 2 GKKLDKSVKTITNDALSPPSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEK 181
G K+D+ V SK + + S +D N + S + + DA + S + K E
Sbjct: 852 GDKVDQGVVLAQQQRKDETSKSDENAKQSATDQNKVTSTDNEGDAGKSSASQPVEKD-ES 910
Query: 182 NDSTNNVPQFQ 214
ND + Q
Sbjct: 911 NDQSKETKVMQ 921
>At5g06700.1 68418.m00757 expressed protein strong similarity to
unknown protein (emb|CAB82953.1)
Length = 608
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +3
Query: 534 NNSKDATTNSEIRNKNNASVSFIDKTPCRIEKSSIDSTNASNEWLVPKSERNDATEIVSV 713
NN T ++E N+N + K P ++ + S+N+S PK + + SV
Sbjct: 182 NNQSRTTADTETVNRNQTTSPAPSKAPVSVDLKTNSSSNSSTASSTPKKQTKTVDLVSSV 241
Query: 714 NEK 722
++
Sbjct: 242 KQE 244
>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
Pfam:PF00646
Length = 727
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 621 IEKSSIDSTNASNEWLVPKSERNDATEIVSVNEKEDDSNVKCGVCLEAFRHRH 779
++ SS++S N WL + E N+ E+V + DD N + A + H
Sbjct: 218 VKVSSLESLNYDENWLKDEVEDNEVDEVVDNEVEVDDLNGSLVIDSPALKELH 270
>At1g17910.1 68414.m02217 wall-associated kinase, putative contains
similarity to wall-associated kinase 4 GI:3355308 from
[Arabidopsis thaliana]
Length = 764
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -1
Query: 588 KHYFYSEFHYWLSRPYYYYKNC*LYR----QLLFPFAIGNTSTF-SNWY 457
K+Y++ Y+LS P ++ +C ++ Q+ FPF IG + WY
Sbjct: 5 KNYYFLSLLYFLSLPILHFSSC-THKCGDIQIPFPFGIGEIGCYLDEWY 52
>At5g41440.1 68418.m05033 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 124
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +3
Query: 669 VPKSERNDATEIVSVNEKEDDSNVKCGVCLEAFRHRHGLITL 794
+P + I+ V + E+ C +CLE F+ H L+ +
Sbjct: 53 IPAINKTTVETIIKVEDVEEGDEGCCSICLEEFKIGHELMCI 94
>At2g35940.2 68415.m04412 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFID 605
NN+ NNS + TN+ N NN+S F+D
Sbjct: 44 NNNSNNSNNNNTNTN-TNNNNSSFVFLD 70
>At2g35940.1 68415.m04411 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 680
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 522 NNSCNNSKDATTNSEIRNKNNASVSFID 605
NN+ NNS + TN+ N NN+S F+D
Sbjct: 44 NNNSNNSNNNNTNTN-TNNNNSSFVFLD 70
>At5g60130.1 68418.m07538 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 300
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 606 KTPCR-IEKSSIDSTNASNEWLVPKSERNDATE-IVSVNEKEDDSNVKCG 749
+T C+ I +SS S E E+N A++ ++S++E +DDS+ CG
Sbjct: 84 RTMCKKIRRSSDQSEEIKVE--SDSDEQNQASDDVLSLDEDDDDSDYNCG 131
>At3g25440.1 68416.m03163 group II intron splicing factor
CRS1-related contains weak similarity to CRS1 [Zea mays]
gi|9837550|gb|AAG00595
Length = 380
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 56 PSKRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNK 169
P+ NR D G D+ SE ++ND + +P DE++K
Sbjct: 330 PAINNREDEDFG-DLGKAKSEGEENDDDKSPNFDEVDK 366
>At3g08970.1 68416.m01048 DNAJ heat shock N-terminal
domain-containing protein low similarity to
PIR|A47079|A47079 heat shock protein dnaJ - Lactococcus
lactis; contains Pfam profile PF00226 DnaJ domain
Length = 572
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +1
Query: 352 SGSMSTGKELEVIIEPTNSKTSAR--VGRLQNDSNEKIPITER 474
S GK LE + E N K S++ G+ N+S+EKIP+ R
Sbjct: 401 SAVQELGKLLEGL-EKKNKKVSSKSQAGQAPNESSEKIPLLSR 442
>At2g31620.1 68415.m03863 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function that is usually associated with protein kinase
domain Pfam:PF00069; similar to receptor-like protein
kinase 4 (GI:13506745) and receptor-like protein kinase
5 (GI:13506747) [Arabidopsis thaliana]
Length = 255
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 679 LFGTNHSFEAFVESMLDFSILHGVLSINETEA 584
+F ++ S V + FS +H VLS+N+T +
Sbjct: 1 MFSSSVSISILVVVAMQFSFIHNVLSLNQTNS 32
>At1g30610.1 68414.m03744 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1006
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 364 STGKELEVIIEPTNSKTSARVGRLQNDSNEKIPITERRSVSNSKRKQKL 510
S G ELE+++E + A+ R +P++E S KQ++
Sbjct: 293 SKGDELELVVEERRVQRIAKDVRWSKSDESLVPVSEDESFRRGNPKQEM 341
>At1g13600.1 68414.m01595 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription factor
Length = 196
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 62 KRNRRMRDSGSDMNCLISENKQNDAESTPPSDEMNKSLEKNDSTNN 199
K N ++++ SD+ LISE K ++ + E+ S+ + S +N
Sbjct: 142 KENAKLKEETSDLRQLISEIKSHNEDDNSFLRELEDSISNSRSDSN 187
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,816,162
Number of Sequences: 28952
Number of extensions: 276242
Number of successful extensions: 1112
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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