Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0801
(519 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 9e-31
SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0) 69 3e-12
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 28 5.3
SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1) 27 7.0
SB_1313| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 130 bits (313), Expect = 9e-31
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +2
Query: 5 DKSQTLLQIITKFASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHPLVGL 184
DK LLQ+IT+FA+ YCS IEGTA IET+ELCGGARICYIFH+ FGRTL + + GL
Sbjct: 379 DKGPYLLQMITRFAATYCSIIEGTAHEIETSELCGGARICYIFHDIFGRTLTIMDAMEGL 438
Query: 185 TRMDILTAIRNATGPRPALFVPE 253
+ DILTAIRNATGPRPALFVPE
Sbjct: 439 STRDILTAIRNATGPRPALFVPE 461
Score = 126 bits (303), Expect = 1e-29
Identities = 62/88 (70%), Positives = 71/88 (80%)
Frame = +1
Query: 256 SFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRIVDVVTQL 435
SFELLVKRQIRRLE+PSLRC+ELVHEEMQRI+QH +V E+ RFPRLH+ IVDV+ L
Sbjct: 463 SFELLVKRQIRRLEEPSLRCIELVHEEMQRIIQHSFDQV-MEIKRFPRLHESIVDVIINL 521
Query: 436 LRTRLPPTNSMVEKLVGIELAYINRSTP 519
L+ RL P N MVE LV IELAYIN + P
Sbjct: 522 LQRRLMPCNEMVENLVAIELAYINTNHP 549
>SB_21750| Best HMM Match : Dynamin_M (HMM E-Value=0)
Length = 498
Score = 68.5 bits (160), Expect = 3e-12
Identities = 32/95 (33%), Positives = 55/95 (57%)
Frame = +1
Query: 235 GFIRP*GSFELLVKRQIRRLEDPSLRCVELVHEEMQRIVQHCGTEVQQEMLRFPRLHQRI 414
G P +FE +VKRQI +L P+++CV++V E+ ++Q C T +M ++P L ++
Sbjct: 401 GLFTPDMAFEAIVKRQIDKLRSPAIKCVDMVMTELTSVIQKCAT----QMAKYPLLRDQV 456
Query: 415 VDVVTQLLRTRLPPTNSMVEKLVGIELAYINRSTP 519
+V +R+ T V+ + +ELAYIN + P
Sbjct: 457 ERIVIDHIRSNEVTTKEQVQTFIELELAYINTNHP 491
Score = 55.6 bits (128), Expect = 2e-08
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +2
Query: 2 SDKSQTLLQIITKFASAYCSTIEGTARNIETTELCGGARICYIFHETFGRTLDSIHPLVG 181
S +++ L+Q++ F++ + IEG+ +I T EL GGA+I IFHE F L +
Sbjct: 323 SVRTKALMQMMQTFSADFEKAIEGSGDSINTVELSGGAKINRIFHERFPYELVKMEFDEK 382
Query: 182 LTRMDILTAIRNATGPRPALFVPE 253
R +I+ AI+N G R LF P+
Sbjct: 383 QLRREIMFAIKNIHGIRVGLFTPD 406
>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +1
Query: 352 QHCGTEVQQEMLRFPRLHQRIVDVVTQL---LRTRLPPTNSMVEKLVGIELA 498
Q C E E R RLHQ+ V + Q L+ L + +KL G+ LA
Sbjct: 190 QQCEEEAATEASRVARLHQQEVGALDQRIDDLKNMLASERAAAKKLAGVHLA 241
>SB_55338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -2
Query: 215 CGSRSKCPCGSNLLKDVWSPKCVQKSRGIYNRFWRRHK 102
CG +K GS L W+PKC + +RG++ + R K
Sbjct: 285 CGGATK---GSKLPAPRWAPKCNRGNRGLFPKVSERRK 319
>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 329 TKKCRGSFSTVAQKSSRKCYVSHACTN-ASSTSSRSC 436
T CRG TV+ S R C VS +C S S R C
Sbjct: 6 TSSCRGHVVTVSCLSCRDCVVSLSCRGCVVSLSCRDC 42
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 112 AATKFSGLNVPGCTFYCRTVSTREFRYNL 26
A T+ GLN P C + RT+S E +Y L
Sbjct: 1121 AGTRRPGLNPPKCNVFRRTMSPCERQYEL 1149
>SB_11098| Best HMM Match : Mak16 (HMM E-Value=5.1)
Length = 460
Score = 27.5 bits (58), Expect = 7.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 212 GSRSKCPCGSNLLKDVWSPKC 150
GSRS C C +LLKD P C
Sbjct: 414 GSRSLCWCNYSLLKDEVKPVC 434
>SB_1313| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 27.5 bits (58), Expect = 7.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 16 DVIANYNEIRECLLFDNRRYSPEH 87
D+ + Y EIR C+ DN + PE+
Sbjct: 78 DLASLYTEIRRCMARDNDEFGPEN 101
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,595
Number of Sequences: 59808
Number of extensions: 347033
Number of successful extensions: 1143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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