Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0798
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)                   30   1.7  
SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)                   28   8.8  
SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)                   28   8.8  
SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
          Length = 389

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 511 IIIVSDGSKDSTVKVAESYSIKYGSDKV 594
           III+ DGS D T + A+     YG DK+
Sbjct: 243 IIIIDDGSPDGTQEAAKQLEDIYGKDKI 270


>SB_11417| Best HMM Match : zf-TAZ (HMM E-Value=0.91)
          Length = 390

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 667 CNDIVCRCRWC 699
           C D VC+CRWC
Sbjct: 227 CVDTVCQCRWC 237


>SB_8902| Best HMM Match : DUF1070 (HMM E-Value=0.76)
          Length = 544

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 667 CNDIVCRCRWC 699
           C D VC+CRWC
Sbjct: 381 CVDTVCQCRWC 391


>SB_21208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 414 LHIMKKKDCHPCWMKQLSSWRTDKKKTLHTN 506
           ++  K+ DC    +K + SW+TD++  L  N
Sbjct: 361 MNFRKEDDCDGYCIKNVGSWKTDQEPQLDVN 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,533
Number of Sequences: 59808
Number of extensions: 327251
Number of successful extensions: 843
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)