Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0797
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             110   1e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           97   8e-21
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 74   8e-14
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.047
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.33 
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)                      28   5.4  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7)                    28   7.1  
SB_50691| Best HMM Match : C2 (HMM E-Value=2.8e-17)                    28   7.1  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        28   7.1  
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)           28   7.1  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      27   9.4  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  110 bits (264), Expect = 1e-24
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
           +D+ L +F+T    +T++DAP H+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 435 TREHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 533
           TREHA+L  +LGV QLIV +NK+D   L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 97.5 bits (232), Expect = 8e-21
 Identities = 42/84 (50%), Positives = 60/84 (71%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
           +++    F+T   + T++DAP H+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269

Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
           TREHA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 31/44 (70%)
 Frame = +1

Query: 124 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 255
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNT 209


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 40  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 186
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 74.1 bits (174), Expect = 8e-14
 Identities = 33/36 (91%), Positives = 34/36 (94%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQ 362
           IDIALWKFET KYYVT+IDAP HRDFIKNMITGTSQ
Sbjct: 25  IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = +1

Query: 184 MGKGSFKYAWVLDKLKAERERGIT 255
           MGKGSFKYAWVLDKLKAERERGIT
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGIT 24


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 25/64 (39%), Positives = 30/64 (46%)
 Frame = +1

Query: 64   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 243
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 244  RGIT 255
            RGIT
Sbjct: 1987 RGIT 1990


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 40  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 135
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 27/85 (31%), Positives = 39/85 (45%)
 Frame = +3

Query: 252 HIDIALWKFETSKYYVTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 431
           HI   L K  + +  +T ID P H  F      G +  D  VL+VAA  G      ++  
Sbjct: 64  HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTV 118

Query: 432 QTREHALLAFTLGVKQLIVGVNKMD 506
           ++  HA+ A       LIV +NK+D
Sbjct: 119 ESIRHAMHAKV----PLIVAINKID 139


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 55  THINIVVIGHVDSGKSTTTGHLIY 126
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483


>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
          Length = 737

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 348 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTV 527
           TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    +++ HT 
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 528 S 530
           +
Sbjct: 849 A 849


>SB_57706| Best HMM Match : DUF678 (HMM E-Value=5.7)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 193 GSFKYAWVLDKLKAERERGITSILLSGSSKLASTMLPSL 309
           GSFK    ++  +  R   +TS++L GSS + ST   +L
Sbjct: 5   GSFKINAQMESSQKSRPARVTSVVLMGSSVIRSTKCATL 43


>SB_50691| Best HMM Match : C2 (HMM E-Value=2.8e-17)
          Length = 430

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/53 (22%), Positives = 28/53 (52%)
 Frame = +3

Query: 297 VTIIDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 455
           V ++D P+ +DFI  ++  +   +  VL+VA  +G     +  +G +  + ++
Sbjct: 265 VQVMDIPMLKDFINALVMDSLTYESGVLLVALHSGSKLLSMDADGYSDPYCII 317


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282


>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
          Length = 572

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 8   RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64



 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -1

Query: 279 RTSREQYRCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQVTS 109
           RT+       TT+T S     YPS+   +  +F        D T  N TT V  +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +3

Query: 306 IDAPLHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
           + A +   F+K+   G S+ DC +L V +GTG    G+ K+G T   AL
Sbjct: 50  VAASITAKFLKSQ--GFSE-DCRILDVGSGTGLQAEGLVKHGFTNIDAL 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,239,255
Number of Sequences: 59808
Number of extensions: 389189
Number of successful extensions: 1011
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)