Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0785
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62730.1 68418.m07875 proton-dependent oligopeptide transport...    27   7.2  
At4g03450.1 68417.m00472 ankyrin repeat family protein contains ...    27   7.2  
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea...    27   7.2  
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea...    27   7.2  
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    27   9.5  
At1g68830.1 68414.m07870 protein kinase family protein contains ...    27   9.5  

>At5g62730.1 68418.m07875 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 589

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 483 VITSTPCNNQASSSTAPSEPLTILSAGLQALIYIFLNLTSLFDM 352
           V+ S   NN +SS ++   P+T L   +Q   Y+FL    LF +
Sbjct: 453 VVVSCCSNNNSSSYSSSPLPITFLWVAIQ---YVFLGSADLFTL 493


>At4g03450.1 68417.m00472 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 641

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 324 MLISSLTDMYLYITVMRTKIQRLSRGNNKKLCDEMKASSFHSLFCF 187
           ML+++L D+      M  +I    R  N K  D+MK ++   L CF
Sbjct: 21  MLVTNLYDLPGEYVSMNPEIFSAMRAGNVKFLDKMKTNNNTPLACF 66


>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
           family protein contains ten G-protein beta-subunit
           (beta-transducin) WD-40 repeats
          Length = 1308

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 212 EAFISSQSFLLLPRLSLWIFVLITVMYKYMSVSEEISIPKKIYKDQYISKSDVKFRKIYM 391
           E  ++ ++F  LPRLS W+F +  +     S+ EE  +      D  +S  DVK  ++  
Sbjct: 112 EISVNLENFESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLSIWDVKESRMAF 171

Query: 392 RACNP 406
              +P
Sbjct: 172 EIQSP 176


>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
           family protein contains ten G-protein beta-subunit
           (beta-transducin) WD-40 repeats
          Length = 1308

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 212 EAFISSQSFLLLPRLSLWIFVLITVMYKYMSVSEEISIPKKIYKDQYISKSDVKFRKIYM 391
           E  ++ ++F  LPRLS W+F +  +     S+ EE  +      D  +S  DVK  ++  
Sbjct: 112 EISVNLENFESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLSIWDVKESRMAF 171

Query: 392 RACNP 406
              +P
Sbjct: 172 EIQSP 176


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
 Frame = -3

Query: 522 SLEMC---SGPLSPCLVITSTPCNNQASSSTAP 433
           +LE C   + P  P L + STP N  ++S T P
Sbjct: 52  ALEACRNQTSPFPPSLTVESTPVNANSASLTTP 84


>At1g68830.1 68414.m07870 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 562

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 447 SSTAPSEPLTILSAGLQALIYIFLNLTSLFDMY*SLYIFLGMLISSL 307
           S+  PS P   ++A L  +++  +NL   FD+Y    IFL M   SL
Sbjct: 331 STQTPSAPSAPVAAALSPVLWQ-MNLPDRFDIYSIGLIFLQMAFPSL 376


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,897,681
Number of Sequences: 28952
Number of extensions: 221487
Number of successful extensions: 543
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)