Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0784
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CS...    66   2e-11
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    29   2.8  
At5g35280.1 68418.m04182 hypothetical protein similar to At2g108...    29   3.8  
At4g07310.1 68417.m01115 hypothetical protein similar to At2g108...    28   5.0  
At4g38750.1 68417.m05488 expressed protein                             27   8.7  
At2g10500.1 68415.m01106 hypothetical protein similar to At2g108...    27   8.7  
At1g52087.1 68414.m05877 hypothetical protein                          27   8.7  

>At3g61140.1 68416.m06842 COP9 signalosome complex subunit 1 / CSN
           complex subunit 1 (CSN1) / COP11 protein (COP11) / FUSCA
           protein (FUS6) FUSCA6, COP11, CSN1; identical to FUS6
           GI:432446, SP:P45432 from [Arabidopsis thaliana];
           contains Pfam profile PF01399: PCI domain; identical to
           cDNA CSN complex subunit 1 (CSN1) GI:18056652
          Length = 441

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 30/53 (56%), Positives = 36/53 (67%)
 Frame = +1

Query: 517 KLEKLDTDLKNYKTNSIKESIRRGHDDLGDHYLDCGDLTSALKCYSRARDYCT 675
           K  KL+ +L +Y+TN IKESIR G++D GD Y  CG L  A K Y R RDYCT
Sbjct: 118 KKVKLENELSSYRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCT 170



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +3

Query: 243 LGFGTYAASYTGFAKLYRLMFVADHC---PSLRLEALKMAISYVMTTYNVNLYHTLHKKL 413
           L    YAA Y G  K+ RL+F+A+HC    +L+ +AL+MA   +    N  L+  +  K+
Sbjct: 34  LDIEAYAALYKGRTKIMRLLFIANHCGGNHALQFDALRMAYDEIKKGENTQLFREVVNKI 93

Query: 414 SEAVASAGLPDIA 452
              +      D+A
Sbjct: 94  GNRLGEKYGMDLA 106


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 9/53 (16%)
 Frame = +1

Query: 529 LDTDLKNYKTNSIKESI-------RRGH--DDLGDHYLDCGDLTSALKCYSRA 660
           LD D  NY    ++E++       R+G   ++LG  Y+DC  L  A  CY+ A
Sbjct: 753 LDPDSSNYVIQLLQEALKCPSDGLRKGQALNNLGSVYVDCEKLDLAADCYTNA 805


>At5g35280.1 68418.m04182 hypothetical protein similar to At2g10840,
           At2g10500, At2g05860, At4g07310, At4g07430, At1g39270
          Length = 205

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 151 EMNTAEPMQVDIPPEDNENNETECYVVENPTLDLEHTLR 267
           + N  + + +     DNEN   EC   +   LD +H  R
Sbjct: 115 KQNIVDDLTLTFKISDNENRVLECLATKKEALDFDHNYR 153


>At4g07310.1 68417.m01115 hypothetical protein similar to At2g10840,
           At5g35280, At2g10500, At2g05860, At4g07430, At1g39270
          Length = 242

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 151 EMNTAEPMQVDIPPEDNENNETECYVVENPTLDLEHTLR 267
           + N  + + +     DNEN   EC   +   LD +H  R
Sbjct: 152 KQNNVDDLTLIFKISDNENRVLECLATKKEALDFDHNYR 190


>At4g38750.1 68417.m05488 expressed protein 
          Length = 1073

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 249 IQGGVFNDVAFRLIVFIIFWGNINLHWFSCVHFEHYWRV 133
           ++GG+ NDV F L+VF + +   +  ++   H    W+V
Sbjct: 4   VEGGLENDVVFALVVFSLQYILASHEYWKYNHGNMRWKV 42


>At2g10500.1 68415.m01106 hypothetical protein similar to At2g10840,
           At5g35280, At2g05860, At4g07310, At4g07430, At1g39270
          Length = 194

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +1

Query: 151 EMNTAEPMQVDIPPEDNENNETECYVVENPTLDLEHTLR 267
           + N  + + +     DNEN   EC   +   LD +H  R
Sbjct: 104 KQNHVDYLTLTFKISDNENRVLECLATKKEALDFDHNYR 142


>At1g52087.1 68414.m05877 hypothetical protein
          Length = 671

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/54 (22%), Positives = 28/54 (51%)
 Frame = +1

Query: 88  IVDSKFRVFSLKKA*NPPIMFEMNTAEPMQVDIPPEDNENNETECYVVENPTLD 249
           + D +F+ F  +      +   + T +PM V+  P +++++E +  + +NP  D
Sbjct: 427 VQDDEFKKFQDESIDRTTLTNTVITDDPMDVNHTPHESQDSEKDDAIEDNPIYD 480


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,038,214
Number of Sequences: 28952
Number of extensions: 288443
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)