Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0780
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger) fa...    29   1.3  
At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger) fa...    27   6.7  
At4g14720.1 68417.m02264 expressed protein                             27   8.9  

>At1g63170.1 68414.m07139 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q06003 Goliath
           protein (G1 protein) {Drosophila melanogaster}; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 381

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
 Frame = -1

Query: 275 QLPCSIHSSCGC---WLLLGDVCP 213
           +LPC  H  CGC   WL +   CP
Sbjct: 340 ELPCGHHFHCGCVDKWLYINATCP 363


>At1g12760.1 68414.m01481 zinc finger (C3HC4-type RING finger)
           family protein low similarity to SP|Q9NVW2 RING finger
           protein 12 (LIM domain interacting RING finger protein)
           {Homo sapiens}; contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 368

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
 Frame = -1

Query: 275 QLPCSIHSSCGC---WLLLGDVCP 213
           +LPC  H  C C   WL +   CP
Sbjct: 328 ELPCGHHFHCSCVDKWLYINATCP 351


>At4g14720.1 68417.m02264 expressed protein
          Length = 315

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 86  PRNKFGAVGRIPHRNIAKTKF*RASPHRDGTHIAKXXXXXXLRDTHRPAAASNRKTSESS 265
           PRN+  A GRIP +        R SP R              +D+H+  + S R  +E++
Sbjct: 94  PRNELEACGRIPLQEDDGACHRRDSP-RSAEFSGSSGQFVADKDSHKTVSVSPRSPAETN 152

Query: 266 TV 271
            V
Sbjct: 153 AV 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,448,943
Number of Sequences: 28952
Number of extensions: 162572
Number of successful extensions: 266
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)