Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0778
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03500.1 68418.m00306 transcriptional co-activator-related lo...    48   5e-06
At5g03220.1 68418.m00270 transcriptional co-activator-related co...    44   1e-04
At1g45233.2 68414.m05190 expressed protein Since this genomic se...    28   5.4  
At5g04020.1 68418.m00382 calmodulin-binding protein-related (PIC...    27   9.4  

>At5g03500.1 68418.m00306 transcriptional co-activator-related low
           similarity to transcriptional co-activator CRSP33 [Homo
           sapiens] GI:4220890
          Length = 443

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)
 Frame = +1

Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPD 660
           LN  RPHQAR TL  +MELQ +QR +     K+  ++ QG+L++A  +L D
Sbjct: 117 LNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQGLLKDAFVTLDD 167



 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +2

Query: 263 SYSMFGNSFNADDAIIRSLESQGFRRLYP--MHFERRRELK 379
           +Y  FG ++  +D ++ SLE QG  +LYP   + + ++EL+
Sbjct: 36  TYVCFGGNYTTED-VLPSLEEQGVPQLYPKDSNLDYKKELR 75


>At5g03220.1 68418.m00270 transcriptional co-activator-related
           contains weak similarity to Cofactor required for Sp1
           transcriptional activation subunit 9 (Transcriptional
           co-activator CRSP33) (RNA polymerase transcriptional
           regulation mediator subunit 7 homolog) (hMED7)
           (Activator-recruited cofactor 34 kDa component) (ARC34)
           (Swiss-Prot:O43513) [Homo sapiens]
          Length = 168

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +1

Query: 508 LNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPDQ 663
           LN  RPHQAR TL  +MELQ +QR +     K+  ++ Q +L++A  +L  Q
Sbjct: 117 LNSLRPHQARATLIHIMELQIQQRKQAVEDIKRRREEAQRLLKDAYLTLDGQ 168



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 263 SYSMFGNSFNADDAIIRSLESQGFRRLYP 349
           +Y  FG ++  +D ++ SLE QG  +LYP
Sbjct: 36  TYVCFGGNYTTED-VLPSLEEQGVPQLYP 63


>At1g45233.2 68414.m05190 expressed protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 448

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +1

Query: 517 FRPHQARET--LRVMMELQKRQRVETAARFKKHLDKVQGILQNALQ-SLPDQNEL 672
           F  HQ +E   LRV +E QK+  +E+ A   K L  +   L++  + SLP Q++L
Sbjct: 153 FELHQRKELCKLRVRLEQQKKSLLESNAERNKFLSSLPVHLKSLKKASLPVQSQL 207


>At5g04020.1 68418.m00382 calmodulin-binding protein-related (PICBP)
            contains similarity to potato calmodulin-binding protein
            PCBP GI:17933110 from [Solanum tuberosum]
          Length = 1495

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/60 (35%), Positives = 32/60 (53%)
 Frame = +1

Query: 499  TSSLNEFRPHQARETLRVMMELQKRQRVETAARFKKHLDKVQGILQNALQSLPDQNELES 678
            ++SL E + HQ  ET R    L+K   V    RF K L+KVQ      +++LP ++  E+
Sbjct: 837  SNSLKEEKEHQG-ETKRSWNSLRK---VILLKRFVKSLEKVQVPNPRKMRNLPVESAFEA 892


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,028,226
Number of Sequences: 28952
Number of extensions: 256437
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)