Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0777
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_9119| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 293 EQYSSWFLE-INPRGEIPVLKVKDALIPDSTRILDYLEFYLDSDLVPLIN-VSKDTKVVT 466
           +Q+  W L  +NP      + ++  + P   R  D L+  LDSD   L+N V + T+  T
Sbjct: 665 KQHVDWLLTTVNPNPPDEDMWMRPDIHPCQKRFQDILDCDLDSDYCDLLNMVQRHTRCST 724

Query: 467 T 469
           +
Sbjct: 725 S 725


>SB_9119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 293 EQYSSWFLE-INPRGEIPVLKVKDALIPDSTRILDYLEFYLDSDLVPLIN-VSKDTKVVT 466
           +Q+  W L  +NP      + ++  + P   R  D L+  LDSD   L+N V + T+  T
Sbjct: 26  KQHVDWLLTTVNPNPPDEDMWMRPDIHPCQKRFQDILDCDLDSDYCDLLNMVQRHTRCST 85

Query: 467 T 469
           +
Sbjct: 86  S 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,410
Number of Sequences: 59808
Number of extensions: 301727
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)