Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0776
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28680.1 68417.m04098 tyrosine decarboxylase, putative simila...    35   0.062
At4g24200.1 68417.m03474 expressed protein hypothetical protein ...    29   2.3  
At1g43710.1 68414.m05021 serine decarboxylase identical to serin...    29   3.1  
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate...    29   4.1  

>At4g28680.1 68417.m04098 tyrosine decarboxylase, putative similar
           to SP|P54768 Tyrosine/DOPA decarboxylase 1 [Includes:
           DOPA decarboxylase (EC 4.1.1.28) (DDC); Tyrosine
           decarboxylase (EC 4.1.1.25)] {Papaver somniferum},
           SP|Q06086 Tyrosine decarboxylase 2 (EC 4.1.1.25)
           {Petroselinum crispum}; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 545

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 527 VKRKGMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANEHGQ--MIVSELEKAI 700
           +K+ G   LP++V++ S+ +H S RKA    G   E++R +K +      M    LE+AI
Sbjct: 225 LKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAI 284

Query: 701 ERE 709
             +
Sbjct: 285 SHD 287


>At4g24200.1 68417.m03474 expressed protein hypothetical protein -
           Arabidopsis thaliana,PIR2:T06677
          Length = 1000

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 562 HLR*VSHAFPLDFGKSFKLAATRAYNIETLPPGLNIPSPFGIP 434
           H+    ++  L  G SF  A    YN  T PPGL++ SP  +P
Sbjct: 838 HMGRTGNSLGLAPGVSFSPAPMYGYNGLTGPPGLSMSSPMYVP 880


>At1g43710.1 68414.m05021 serine decarboxylase identical to serine
           decarboxylase [Arabidopsis thaliana] GI:15011302;
           contains Pfam profile PF00282: Pyridoxal-dependent
           decarboxylase conserved domain
          Length = 482

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 539 GMRNLPEMVIFTSEDSHYSIRKAAHWLGFGTESLRPIKANE 661
           G    P+ +++ S +SHYS+ KAA       E +  + + E
Sbjct: 185 GREMFPDGILYASRESHYSVFKAARMYRMECEKVDTLMSGE 225


>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
           receptor kinase 1 (BAK1) / somatic embryogenesis
           receptor-like kinase 3 (SERK3) identical to SP|Q94F62
           BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
           1 precursor (EC 2.7.1.37) (BRI1-associated receptor
           kinase 1) (Somatic embryogenesis receptor-like kinase 3)
           {Arabidopsis thaliana}; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain;
           identical to cDNA somatic embryogenesis receptor-like
           kinase 3 (SERK3) GI:14573458
          Length = 615

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 169 EELEAILDLDIGQEVNDDDLERCVRQVLHTASKQIRQRSKTSYMAALIHMD 321
           ++LEA++D+D+     D+++E+ ++  L        +R K S +  ++  D
Sbjct: 516 KKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 566


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,028
Number of Sequences: 28952
Number of extensions: 311092
Number of successful extensions: 746
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)