Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0774
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger) fa...    29   1.4  
At4g22850.1 68417.m03300 expressed protein                             28   3.2  
At2g25480.1 68415.m03051 expressed protein                             28   3.2  
At1g20500.1 68414.m02554 4-coumarate--CoA ligase family / 4-coum...    28   3.2  
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family...    28   4.3  
At2g40070.1 68415.m04923 expressed protein                             28   4.3  
At3g61670.1 68416.m06911 expressed protein weak similarity to ex...    27   5.7  
At1g60790.1 68414.m06843 expressed protein                             27   5.7  
At2g05120.1 68415.m00539 expressed protein                             27   7.5  
At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ...    27   9.9  
At3g14610.1 68416.m01850 cytochrome P450, putative similar to GB...    27   9.9  
At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger) fa...    27   9.9  
At2g02780.1 68415.m00221 leucine-rich repeat transmembrane prote...    27   9.9  
At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family prot...    27   9.9  
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    27   9.9  

>At3g62690.1 68416.m07042 zinc finger (C3HC4-type RING finger)
           family protein (ATL5) identical to RING-H2 zinc finger
           protein ATL5 [Arabidopsis thaliana]
           gi|4928401|gb|AAD33583
          Length = 257

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 24/81 (29%), Positives = 36/81 (44%)
 Frame = -3

Query: 489 CRRICRRW*AHGRERSRWPHSSANPRQLCLAASRNPHVGARIDASLSTSPLEAYKLKAYS 310
           C     RW    + R      SA+ R L  AA+R+P   +   + L  + LE   +  YS
Sbjct: 45  CFHSYARWLFRRQNRRIRRRISAHLRSL--AAARDPTQSSSSLSPLDPTVLEKIPIFVYS 102

Query: 309 SRPHPATCRETCPVVQSDFQE 247
            + H +   E C V  S+F+E
Sbjct: 103 VKTHESPLEE-CSVCLSEFEE 122


>At4g22850.1 68417.m03300 expressed protein
          Length = 296

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 168 VGLPYFEVQFFCHSNTGHDDRY 103
           V LPYF  Q FCH   G  +RY
Sbjct: 148 VSLPYFIGQLFCHKIQGWLERY 169


>At2g25480.1 68415.m03051 expressed protein 
          Length = 404

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/78 (26%), Positives = 36/78 (46%)
 Frame = +3

Query: 276 KFLCKSLDVVEKSMPSIYMPPEEMYSETRQYVLRRADSVTRLGTAVLDSRMNAATATVLD 455
           K L KSL+     MP+ Y  P+   +E ++  + R  S  +LG    +SR ++  A  + 
Sbjct: 228 KMLRKSLNFKATPMPTFYQEPQLPKTELKKIAITRPKS-PKLGRKKTNSRADSEEAITI- 285

Query: 456 RALTTADKYVDKYLPPDN 509
           +        +D+  P DN
Sbjct: 286 QTPRFGRLSLDEKTPKDN 303


>At1g20500.1 68414.m02554 4-coumarate--CoA ligase family /
           4-coumaroyl-CoA synthase family similar to SP|Q42524 and
           SP|Q9S725; contains Pfam AMP-binding enzyme domain
           PF00501
          Length = 412

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +2

Query: 386 FRDAARHSCLGFADECGHRDRSRPCAHHRRQIRR 487
           F DAA   CL F+D     DR   C +H   IRR
Sbjct: 55  FIDAATGQCLTFSDLWRAVDRVADCLYHEVGIRR 88


>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 932

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 191 PWVRSP*RPAYS*HSRWFNSW 253
           P+++   RP+YS  SRW+ +W
Sbjct: 110 PFIKKTIRPSYSTFSRWYIAW 130


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   RCTTVLYLSTAPTMTKTNQPAMPNLEVVSR 93
           R TT L  STA + T T++P +P  + +SR
Sbjct: 283 RSTTPLSRSTARSSTPTSRPTLPPSKTISR 312


>At3g61670.1 68416.m06911 expressed protein weak similarity to
           extra-large G-protein [Arabidopsis thaliana] GI:3201682
          Length = 790

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -3

Query: 189 HR-PTKQRVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLICFRHC 40
           HR P   R   PYF  Q+  ++N GH D +   P  +    H    C+ HC
Sbjct: 285 HRFPIHGRGPHPYFSGQYVGNNNNGH-DLFDAYPQQNGHFHHSSCSCY-HC 333


>At1g60790.1 68414.m06843 expressed protein
          Length = 541

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/65 (26%), Positives = 24/65 (36%)
 Frame = -3

Query: 297 PATCRETCPVVQSDFQELNHREC*LYAGR*GLLTQGHRPTKQRVGLPYFEVQFFCHSNTG 118
           PA   +    V  D    ++ +C +Y G          P       PY +  F CH+N  
Sbjct: 168 PANTSKENGSVTEDRSRGSYEDCDIYDGSWVRADDETMPYYPPGSCPYIDRDFNCHANGR 227

Query: 117 HDDRY 103
            DD Y
Sbjct: 228 PDDAY 232


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 507 CLAGGTCRRICRRW*AHGRERSRWPHSSANPRQLCL 400
           C++GG  +  C  W   G +   W H +  P + C+
Sbjct: 101 CVSGGMDKETCLSWFITGSKVFVWSHLTTLPSRKCV 136


>At4g26120.1 68417.m03760 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 600

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 387 SVTRLGTAVLDSRMNAATATVLDRALTTADKY 482
           S+   G  +LD+ ++  TA V+ + LT AD Y
Sbjct: 346 SLLMKGANILDTTLDGRTALVIVKRLTKADDY 377


>At3g14610.1 68416.m01850 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 512

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 139 KLYFKIRESNPLFRWSMSLGEKSLATGIQLALPVV 243
           +LY  + +   +    M LGE +L  GIQ+ LP +
Sbjct: 381 RLYPPVAQLKRVVNKEMKLGELTLPAGIQIYLPTI 415


>At2g47560.1 68415.m05935 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 227

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 363 DASLSTSPLEAYKLKAYSSR-PHPATCRETCPVVQSDFQE 247
           D +L  + L+   +  YSS+ P P   +E C V  S+F+E
Sbjct: 78  DQALDQAVLDKIPIFVYSSKNPPPPEEKEECSVCLSEFEE 117


>At2g02780.1 68415.m00221 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 753

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -1

Query: 281 KLVQLYNRISRS*TTGSASCMPVARDFSPRDIDQRNRGLDSLILKYNFSVTPIPDTTIGM 102
           KL  L  ++S S  T S + + ++   SP+ I + +  L+SL L  NF    IP+  + +
Sbjct: 96  KLFTLLTQLS-SLKTLSLTSLGISGSLSPKIITKLSPSLESLNLSSNFISGKIPEEIVSL 154


>At1g44835.1 68414.m05136 YbaK/prolyl-tRNA synthetase family protein
           contains Pfam PF04073: YbaK / prolyl-tRNA synthetases
           associated domain; similar to 25.7 kDa protein
           (GI:7271117) [Cicer arietinum]
          Length = 307

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +3

Query: 168 PSVSLVYVPG*EVPSDRHTASTP---GGSTPGNPIV--QLDKFLCKSLDVVEKSMPSIYM 332
           PS S++ VP  E+P+   +   P     S    P+   +  K  CK   V E S PS Y 
Sbjct: 183 PSNSVI-VP--EIPNQTSSTQIPLPKSVSAEVKPVASAKTSKPACKVKSVAENSAPSAYK 239

Query: 333 PPEEMYSE 356
            PE+   E
Sbjct: 240 NPEKFVQE 247


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 16  VLYLSTAPTMTKTNQPAMPNLEVVSRVASIPIVVSGIGVTEKLYFKIRES-NPLFRWSMS 192
           ++YL    T++  +QP  P++ + SR+  I    +G  V E L   +  +   L+ W   
Sbjct: 545 IMYLVAPSTVSSRSQP-QPSIRLTSRILKIAKSYNGQDVREGLTGNLSATLEQLYAWEKK 603

Query: 193 L 195
           L
Sbjct: 604 L 604


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,463,626
Number of Sequences: 28952
Number of extensions: 271384
Number of successful extensions: 740
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)