Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0773
         (547 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.81 
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 245 QTDFHSKLEGNRTLSVLFLAKEHALQNLPLDQKFDPLRRK 364
           Q  F+ K + +RT     + + H++QN+P+    +P+RR+
Sbjct: 866 QFKFNGKTKASRTPPNQPIERSHSMQNIPIAPNTEPIRRR 905


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 147  ARSTPVTGRPGIAVPPGSALRIPLSHSLVPI 239
            ARS+PV    G A  P S+  +P SH  VPI
Sbjct: 3128 ARSSPVHFNLGRAQSPSSSSLLPRSHEPVPI 3158


>SB_19699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 716

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +2

Query: 215 FITLSGSYTRQTDFHSKLEGNRTLSVLFLAKEHALQNLPLDQKFD 349
           +IT   S  R T+ HS  +  R+L  LF  K+  +  + +   FD
Sbjct: 654 YITSPSSVLRWTELHSTAQNRRSLLSLFKVKKLMIMVMAMMNGFD 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,590
Number of Sequences: 59808
Number of extensions: 311719
Number of successful extensions: 822
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)