Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0772
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_86| Best HMM Match : PGK (HMM E-Value=0)                            69   3e-12
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)                29   4.5  
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   6.0  

>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 37/59 (62%), Positives = 42/59 (71%)
 Frame = +1

Query: 106 MALNKLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSXKYALIKALNQLYL 282
           MALNKL I  +++  KRVLMRVDFNVPLK   ITNNQRIVAAL S K+ L K    + L
Sbjct: 1   MALNKLGIADVDVKDKRVLMRVDFNVPLKGKEITNNQRIVAALPSIKHCLEKGAKSVVL 59



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +3

Query: 249 CFDKGAKSVVLMSHLGRPDGQVNLKYTLKTVAEE 350
           C +KGAKSVVLMSHLGRPDG+V  KY++  VA E
Sbjct: 49  CLEKGAKSVVLMSHLGRPDGRVQEKYSMAPVANE 82


>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
          Length = 646

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 507 LYKIYSMNETRKTKLIVLTCYFFPYIKTLFLGFQVI 400
           L  ++ +N TR    I L CY F YI  + L F+++
Sbjct: 24  LNPVHHINLTRSIANIQLECYLFCYINNVLLFFKLL 59


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
 Frame = -1

Query: 313 TWPSGLPKCDISTTDLAPLSKHIXR-----NLRQLQCAGC 209
           TWP    +C ++  + + LSKHI R     N+ Q  C  C
Sbjct: 355 TWPFACEQCGVTFANRSNLSKHIRRRHSDPNVDQNTCGTC 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,826,499
Number of Sequences: 59808
Number of extensions: 313920
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)