Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0754
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28488| Best HMM Match : PAX (HMM E-Value=0)                         31   0.70 
SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)                 29   4.9  
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_28488| Best HMM Match : PAX (HMM E-Value=0)
          Length = 551

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 223 DEETREDSKFRSNNSLRSRANYEAQFKAASI 315
           D++ +ED K   N+SL SR N+ + +  ASI
Sbjct: 179 DDKGKEDEKVEKNSSLPSRHNFSSSYSIASI 209


>SB_32252| Best HMM Match : RVT_1 (HMM E-Value=9.2e-21)
          Length = 1033

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 475 ALDLDLPCI*IRELLRLFW 419
           ALD  +P I +R+LLR+FW
Sbjct: 492 ALDKQMPTIRLRQLLRIFW 510


>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1570

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 164 CDGVIWTQDSLPRVGEFFKQMKKRGKTVNFVPI 262
           CD +IWT    P V E    ++K  K+ + VPI
Sbjct: 99  CDELIWTGYKRPLVDEDLWALRKNMKSTHVVPI 131


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -1

Query: 132 NLCKSSTLKSNKCLDSIPIMLNTLRLFFC 46
           N CK S     KC D IPI +   +  FC
Sbjct: 391 NNCKKSCTDCEKCEDKIPICMEFAKRGFC 419


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,358,863
Number of Sequences: 59808
Number of extensions: 380430
Number of successful extensions: 1009
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)