Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0751
(807 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 103 1e-22
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 91 6e-19
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 90 2e-18
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 81 1e-15
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 79 3e-15
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 79 3e-15
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 77 1e-14
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 75 7e-14
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 74 1e-13
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 73 2e-13
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 42 5e-04
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 41 8e-04
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 40 0.001
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 40 0.001
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 40 0.002
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 40 0.003
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 38 0.008
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 35 0.073
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 32 0.39
At5g27970.1 68418.m03369 expressed protein 30 1.6
At4g11870.1 68417.m01888 hypothetical protein 30 1.6
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 30 1.6
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 29 2.7
At2g43040.1 68415.m05341 calmodulin-binding protein similar to p... 29 2.7
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 29 3.6
At2g35110.1 68415.m04307 HEM protein-related weak similarity to ... 29 4.8
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 28 6.3
At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p... 28 6.3
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s... 28 6.3
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s... 28 6.3
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 103 bits (247), Expect = 1e-22
Identities = 51/83 (61%), Positives = 62/83 (74%)
Frame = +1
Query: 256 ATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 435
ATIL +M V+ PAAKMLVELS++QD AGDGTT+VVVIAGALL + LL GIHPTVIS
Sbjct: 71 ATILNKMEVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVIS 130
Query: 436 DGFQKALQLALQVVENMSTPVDL 504
D KA A+ ++ M+ PV+L
Sbjct: 131 DSLHKACGKAIDILTAMAVPVEL 153
Score = 88.2 bits (209), Expect = 6e-18
Identities = 42/96 (43%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Frame = +3
Query: 513 DALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGT 692
D+L+K+A+TSLNSKVVSQ+ST+LAP+AV A+ +V++P + VDLRD+K+++++GGT
Sbjct: 157 DSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVIDPEKPEI---VDLRDIKIVKKLGGT 213
Query: 693 VEDAELIQGLVIPHRAAN-VNGPHPLKRLKLVLYNF 797
V+D ++GLV + + GP ++ K+ + F
Sbjct: 214 VDDTHTVKGLVFDKKVSRAAGGPTRVENAKIAVIQF 249
Score = 77.8 bits (183), Expect = 8e-15
Identities = 43/73 (58%), Positives = 50/73 (68%)
Frame = +2
Query: 56 MAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGE 235
MA K G KA S V D + DIR +NIN+A+AV+DA+RTSLGP+GMDKMI ANGE
Sbjct: 8 MASKPRGS--KAESFV--DNKRREDIRFANINSARAVSDAVRTSLGPKGMDKMISTANGE 63
Query: 236 VTITNDEQQF*NK 274
V ITND NK
Sbjct: 64 VIITNDGATILNK 76
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 91.5 bits (217), Expect = 6e-19
Identities = 41/82 (50%), Positives = 60/82 (73%)
Frame = +1
Query: 262 ILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDG 441
IL+++ V HPAAK ++ELSR QD E GDGTTSV+V+AG +L AE L+K HPTVI
Sbjct: 64 ILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVICRA 123
Query: 442 FQKALQLALQVVENMSTPVDLN 507
+ KAL+ ++ V++ ++ +D+N
Sbjct: 124 YIKALEDSIAVLDKIAMSIDIN 145
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +2
Query: 143 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
NI A+KAVAD IRT+LGPR M KM+ A G + +TND
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTND 60
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +3
Query: 480 KYVNSSGLEYEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLR 659
K S + +L + + +K SQ ++A +A+ A V + G+ VD++
Sbjct: 137 KIAMSIDINDRSQVLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQGL-REVDIK 195
Query: 660 DVKVIERI-GGTVEDAELIQGLV 725
+E++ GG ED+E+++G++
Sbjct: 196 KYIKVEKVPGGQFEDSEVLKGVM 218
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 89.8 bits (213), Expect = 2e-18
Identities = 42/85 (49%), Positives = 65/85 (76%)
Frame = +1
Query: 256 ATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 435
ATIL+QM V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L +GIHP I+
Sbjct: 71 ATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIA 130
Query: 436 DGFQKALQLALQVVENMSTPVDLNM 510
+G++ A ++A++ +E ++ + ++
Sbjct: 131 EGYEMASRVAVEHLERIAQKFEFDV 155
Score = 58.8 bits (136), Expect = 4e-09
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 107 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
K + + D + +NI A KAVA +R+SLGP+GMDKM+Q +G++TITND
Sbjct: 21 KTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITND 69
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/97 (29%), Positives = 54/97 (55%)
Frame = +3
Query: 513 DALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGT 692
+ L++ T+L+SK+V++ LA IAV+A+ AV + + +DL +KV ++GG
Sbjct: 159 EPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD--LERRDVNLDL--IKVEGKVGGK 214
Query: 693 VEDAELIQGLVIPHRAANVNGPHPLKRLKLVLYNFAF 803
+ED ELI G++I ++ P ++ + + F
Sbjct: 215 LEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPF 251
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 80.6 bits (190), Expect = 1e-15
Identities = 37/79 (46%), Positives = 59/79 (74%)
Frame = +1
Query: 274 MSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKA 453
M V + AK++VELSR+QD E GDGTT VVV+AGALL+ AE+ L +GIHP I++G++ A
Sbjct: 1 MDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMA 60
Query: 454 LQLALQVVENMSTPVDLNM 510
++A++ +E ++ + ++
Sbjct: 61 SRVAVEHLERIAQKFEFDV 79
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/97 (29%), Positives = 54/97 (55%)
Frame = +3
Query: 513 DALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGT 692
+ L++ T+L+SK+V++ LA IAV+A+ AV + + +DL +KV ++GG
Sbjct: 83 EPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVAD--LERRDVNLDL--IKVEGKVGGK 138
Query: 693 VEDAELIQGLVIPHRAANVNGPHPLKRLKLVLYNFAF 803
+ED ELI G++I ++ P ++ + + F
Sbjct: 139 LEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPF 175
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 79.4 bits (187), Expect = 3e-15
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +1
Query: 256 ATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 435
ATILK + + +PAAK+LV++S+ QD E GDGTTSVVV+AG LL AEKL+ IHP I
Sbjct: 63 ATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTII 122
Query: 436 DGFQKALQLA 465
G++ A + A
Sbjct: 123 AGYRMASECA 132
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/56 (35%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Frame = +2
Query: 101 VYKD---KSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAA--NGEVTITND 253
++KD + K R+++ A A++D ++++LGP+GMDK++Q+ VT+TND
Sbjct: 6 IFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTND 61
Score = 37.1 bits (82), Expect = 0.014
Identities = 25/99 (25%), Positives = 52/99 (52%)
Frame = +3
Query: 504 EYEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERI 683
++ LLK A T+L SK++SQ A +AV A V + +L +++I++
Sbjct: 149 KFRSDLLKIAMTTLCSKILSQDKEHFAEMAVDA--------VFRLKGSTNLEAIQIIKKP 200
Query: 684 GGTVEDAELIQGLVIPHRAANVNGPHPLKRLKLVLYNFA 800
GG+++D+ L +G ++ + + P ++ +++ N A
Sbjct: 201 GGSLKDSFLDEGFIL-DKKIGIGQPKRIENANILVANTA 238
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 79.4 bits (187), Expect = 3e-15
Identities = 38/75 (50%), Positives = 53/75 (70%)
Frame = +1
Query: 256 ATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 435
ATIL+ + V HPAAK+LVEL+ QD E GDGTTSVV++A LL A L++ IHPT I
Sbjct: 62 ATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSII 121
Query: 436 DGFQKALQLALQVVE 480
G++ A++ + + +E
Sbjct: 122 SGYRLAMRESCKYIE 136
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/54 (44%), Positives = 36/54 (66%)
Frame = +2
Query: 92 NSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
N + D+ D+R N+ A +AV++ ++TSLGP G+DKM+ G+VTITND
Sbjct: 7 NPDISGDRQSGQDVRTQNVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITND 60
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 77.0 bits (181), Expect = 1e-14
Identities = 34/80 (42%), Positives = 53/80 (66%)
Frame = +1
Query: 259 TILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISD 438
T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+ +E+ + +G+HP V+ D
Sbjct: 61 TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVD 120
Query: 439 GFQKALQLALQVVENMSTPV 498
GF+ A + LQ ++N TPV
Sbjct: 121 GFEIAKRATLQFLDNFKTPV 140
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 146 INAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
INAAK + D ++++LGP+G KM+ +G++ +T D
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKD 58
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 74.5 bits (175), Expect = 7e-14
Identities = 33/80 (41%), Positives = 52/80 (65%)
Frame = +1
Query: 259 TILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISD 438
T+LK+M + +P A M+ + AQD +GDGTTS V+ G L+ +E+ + +G+HP V+ D
Sbjct: 61 TLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVD 120
Query: 439 GFQKALQLALQVVENMSTPV 498
GF+ A + LQ ++ TPV
Sbjct: 121 GFEIAKRATLQFLDTFKTPV 140
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/36 (41%), Positives = 26/36 (72%)
Frame = +2
Query: 146 INAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
INAAK + D ++++LGP+G KM+ +G++ +T D
Sbjct: 23 INAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKD 58
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +1
Query: 256 ATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 435
ATI+ ++ + HPAAK+LV ++AQ E GDG + AG LL +AE+L++ G+HP+ I
Sbjct: 70 ATIVNELEIQHPAAKLLVLAAKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEII 129
Query: 436 DGFQKALQLALQVVENM 486
G+ KA+ A++++E +
Sbjct: 130 SGYTKAVSKAVEILEQL 146
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 104 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
Y+ S + + NI A K ++ RTSLGP GM+KM+ ++ +TND
Sbjct: 19 YRHLSGLDEAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTND 68
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/82 (36%), Positives = 56/82 (68%)
Frame = +1
Query: 256 ATILKQMSVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVIS 435
ATI+K + ++HPAAK+LV+++++QD E GDGTT+VV++A L A+ ++ G+H +
Sbjct: 66 ATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLI 125
Query: 436 DGFQKALQLALQVVENMSTPVD 501
++ A LA+ V+ ++ ++
Sbjct: 126 RSYRTASTLAIAKVKELAVSIE 147
Score = 56.4 bits (130), Expect = 2e-08
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +2
Query: 137 LSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
+SNINA AV D +RT+LGPRGMDK+I G VTI+ND
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISND 64
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 41.9 bits (94), Expect = 5e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +1
Query: 316 SRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQVVENMSTP 495
S+ D+ AGDGTT+ VV+A L+ K++ G +P +I+ G +K + + ++ MS
Sbjct: 130 SKTNDL-AGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTTKALVAELKKMSKE 188
Query: 496 VD 501
V+
Sbjct: 189 VE 190
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +1
Query: 259 TILKQMSVIHPAAKMLVELSRAQDIE----AGDGTTSVVVIAGALLDSAEKLLQKGIHPT 426
T+LK++ + P + V+L R + AGDG+T+ +++A L+ K++ G +P
Sbjct: 94 TVLKEIELEDPLENVGVKLVRQAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPI 153
Query: 427 VISDGFQKALQLALQVVENMSTPVD 501
++ G +K + + +++MS ++
Sbjct: 154 QVARGIEKTTKALVLELKSMSREIE 178
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +1
Query: 295 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV 474
AK++ + + + AGDGTT+ VV+A + K++ G +P +I+ G +K + +
Sbjct: 126 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTE 185
Query: 475 VENMSTPVD 501
++ MS V+
Sbjct: 186 LKKMSKEVE 194
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 62 PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVT 241
P+ AI + T IR K +AD + +LGP+G + ++++ G
Sbjct: 45 PRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNK-LADLVGVTLGPKGRNVVLESKYGSPR 103
Query: 242 ITND 253
I ND
Sbjct: 104 IVND 107
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +1
Query: 295 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV 474
AK++ + + + AGDGTT+ VV+A + K++ G +P +I+ G +K + +
Sbjct: 126 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVTE 185
Query: 475 VENMSTPVD 501
++ MS V+
Sbjct: 186 LKKMSKEVE 194
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 62 PKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVT 241
P+ AI + T IR K +AD + +LGP+G + ++++ G
Sbjct: 45 PRRSSSAIVCAAKELHFNKDGTTIRRLQAGVNK-LADLVGVTLGPKGRNVVLESKYGSPR 103
Query: 242 ITND 253
I ND
Sbjct: 104 IVND 107
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/35 (51%), Positives = 26/35 (74%)
Frame = +2
Query: 107 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDK 211
K + K D + +NI+A KAVA +R+SLGP+GM+K
Sbjct: 21 KTRLKGIDAQKANISAGKAVARILRSSLGPKGMEK 55
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +1
Query: 295 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV 474
AK++ + + + AGDGTT+ VV+A + K++ G +P +I+ G +K + +
Sbjct: 122 AKLVRQAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRGIEKTAKALVNE 181
Query: 475 VENMSTPVD 501
++ MS V+
Sbjct: 182 LKLMSKEVE 190
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/74 (21%), Positives = 41/74 (55%)
Frame = +1
Query: 277 SVIHPAAKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKAL 456
++ + A ++ E++ + AGDGTT+ +++A ++ + + G + + +G K +
Sbjct: 96 TIENAGATLIQEVAIKMNESAGDGTTTAIILAREMIKAGSLAIAFGANAVSVKNGMNKTV 155
Query: 457 QLALQVVENMSTPV 498
+ ++V++ S PV
Sbjct: 156 KELVRVLQMKSIPV 169
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = +1
Query: 295 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV 474
A ++ E++ + AGDGTT+ ++A ++ + G +P + G K +Q ++
Sbjct: 115 AALIREVASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEE 174
Query: 475 VENMSTPV 498
++ + PV
Sbjct: 175 LQKKARPV 182
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 32.3 bits (70), Expect = 0.39
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 527 GSCNITKFQSSFTTLNYFGTHCSASNSSSNGTYC 628
G CN + S+F+TL G HC + G +C
Sbjct: 407 GYCNAVQPNSTFSTLTKCGNHCGKGKEPNQGCHC 440
>At5g27970.1 68418.m03369 expressed protein
Length = 1629
Score = 30.3 bits (65), Expect = 1.6
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +3
Query: 531 AATSLNSKVVSQHS-TILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVEDAE 707
A LNS + S TI+ P V+ V P+ +VDL+DV V+ T ++ +
Sbjct: 567 AVEPLNSFLASLCKFTIVLPTDVERKSVVQSPVSKRSEVQVDLKDVIVL-----TPKNVQ 621
Query: 708 LIQGLV-IPHRAANVNGP 758
++ L I HR NV GP
Sbjct: 622 ALRTLFNIAHRLHNVLGP 639
>At4g11870.1 68417.m01888 hypothetical protein
Length = 74
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 718 PWISSASSTVPPIRSMTFTSLRSTLAPTPLTIGSIT 611
P ++ ++ VP I S T T T+A TP+T+G+ T
Sbjct: 37 PAVTPTTTVVPAITSATTTVTAPTMAVTPVTMGTPT 72
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 107 KDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
KD + R + + +ADA++ ++GP+G + +I+ + G +T D
Sbjct: 35 KDIRFGVEARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKD 83
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 128 DIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITND 253
+ R + + +ADA++ ++GP+G + +I+ + G +T D
Sbjct: 41 EARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKD 82
>At2g43040.1 68415.m05341 calmodulin-binding protein similar to
pollen-specific calmodulin-binding protein MPCBP
GI:10086260 from [Zea mays]; contains Pfam profile
PF00515: TPR Domain
Length = 704
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 271 QMSVIHPAAKMLVELS--RAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGF 444
Q SV AA +++E +A+ ++ T ++LDS EK+ Q+GI + +
Sbjct: 113 QQSVSQHAANLVLEAIYLKAKSLQKLGRITEAAHECKSVLDSVEKIFQQGIPDAQVDNKL 172
Query: 445 QKALQLALQVV 477
Q+ + A++++
Sbjct: 173 QETVSHAVELL 183
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 295 AKMLVELSRAQDIEAGDGTTSVVVIAGALLDSAEKLLQKGIHPTVISDGFQKALQLALQV 474
A+++ +++ A + AGDGTT V+ A+L K + G++ + G A+ +
Sbjct: 101 AELVKQVASATNKVAGDGTTCATVLTQAILIEGCKSVAAGVNVMDLRVGINMAIAAVVSD 160
Query: 475 VEN----MSTPVDL 504
+++ +STP ++
Sbjct: 161 LKSRAVMISTPEEI 174
>At2g35110.1 68415.m04307 HEM protein-related weak similarity to
Membrane-associated protein Hem (Dhem-2)
(Swiss-Prot:P55162) [Drosophila melanogaster]; weak
similarity to Nck-associated protein 1 (NAP 1) (p125Nap1)
(Membrane-associated protein HEM-2) (Swiss-Prot:P55161)
[Rattus norvegicus]
Length = 1339
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/57 (28%), Positives = 26/57 (45%)
Frame = -2
Query: 767 QWMRAIHIGCTMRNDQSLD*LSIFYSSTYTLNDFHISEVNSCTNTTNNRFHYCSNCL 597
+W+R I ND S L F++S T N ++ + N T +N H + C+
Sbjct: 1038 EWVRLILEEVGGANDNSWSLLPYFFASFMTSNAWNTTGFNIETGGFSNNIHCLARCI 1094
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/38 (26%), Positives = 16/38 (42%)
Frame = -2
Query: 698 FYSSTYTLNDFHISEVNSCTNTTNNRFHYCSNCLHCNG 585
F+ + FH + C ++F +C NC C G
Sbjct: 104 FFDDDISKEQFHCDDCGICRVGGRDKFFHCQNCGACYG 141
>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
protein annotation temporarily based on supporting cDNA
gi|23452833|gb|AF543710.1|
Length = 533
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 280 HSFVSKLLLIISYCNFSIGCLNHLI 206
HSFVS+LLL+++ S+ CL ++
Sbjct: 25 HSFVSRLLLLLTLLPVSLACLAFIL 49
>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
similarity to F-box protein FBL6 GI:6456737 from [Homo
sapiens]
Length = 395
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 770 FQWMRAIHI-GCTMRNDQSLD*LSIFYSSTYTL 675
FQW+ + + GCT+ ND SLD L + +TL
Sbjct: 90 FQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTL 122
>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
similarity to F-box protein FBL6 GI:6456737 from [Homo
sapiens]
Length = 395
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 770 FQWMRAIHI-GCTMRNDQSLD*LSIFYSSTYTL 675
FQW+ + + GCT+ ND SLD L + +TL
Sbjct: 90 FQWLEHLSLSGCTVLNDSSLDSLRYPGARLHTL 122
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,763,280
Number of Sequences: 28952
Number of extensions: 331750
Number of successful extensions: 980
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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