Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0742
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.60 
SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)            28   9.8  

>SB_35163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 31.9 bits (69), Expect = 0.60
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +3

Query: 24  STTGKLFKDLGILEHSQQAWQKTLSTSARGYLWLETNAPVYYAQTVEICRPYTQLSKDAF 203
           S T +  ++ GI + + +A+        +G  W++ N P YY++  E   P  Q + D  
Sbjct: 218 SKTARFAQEYGIEQGTIKAYGHVKHAFDKGNSWVQENYPTYYSKFREYADPAGQYAMDKL 277

Query: 204 FIA 212
            +A
Sbjct: 278 TLA 280


>SB_10165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
 Frame = +2

Query: 239 KCPRLLVEKTPVVIKTIEEYAPGLVDNVQSYASTAWSG-LKKYSSDYYQITTDYLVTKVF 415
           K  R+  + T      I + A  + DN  SY     S    +YS  YY+++ +Y  T   
Sbjct: 26  KSTRVTDKATSNTATCITDKATSITDNRYSYVYYRQSHEYYRYSYVYYRLSHEYYRTATC 85

Query: 416 VGDWAPEVLQNKTQSALNMTK-SQVSSYY 499
           + D A  +      +A  MT+ + +S  Y
Sbjct: 86  ISDKATSINDIMCMTAATMTRTAHISQSY 114


>SB_3481| Best HMM Match : Viral_helicase1 (HMM E-Value=1.1)
          Length = 1347

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 30  TGKLFKDLGILEHSQQAWQKTLSTSARGYLWLETNAPVYYAQT 158
           TGKLF  LG +EH  Q    TL  S R    ++T   +YY ++
Sbjct: 753 TGKLFSKLGSVEHRAQVILYTLLLSDRYRHGIDTGL-LYYMKS 794


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,368,607
Number of Sequences: 59808
Number of extensions: 508425
Number of successful extensions: 1181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)