Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0728
(777 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 159 3e-39
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 7e-15
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.084
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 33 0.20
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6) 30 1.8
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 30 1.8
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.2
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6) 29 3.2
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 29 4.2
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 4.2
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 29 5.5
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20) 28 7.3
SB_53389| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10) 28 9.7
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17) 28 9.7
SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13) 28 9.7
SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08) 28 9.7
SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036) 28 9.7
SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.7
SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11) 28 9.7
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 28 9.7
SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0) 28 9.7
SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0) 28 9.7
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
SB_6629| Best HMM Match : Lipase_GDSL (HMM E-Value=2.2) 28 9.7
SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.7
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 159 bits (385), Expect = 3e-39
Identities = 75/86 (87%), Positives = 80/86 (93%)
Frame = +1
Query: 250 LSKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 429
L KTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKNPADLPKLVEGL RLAKSDPMVQ
Sbjct: 453 LVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFT 512
Query: 430 EESGEHIVAGAGELHLEICLKDLEED 507
EESGEHIVAGAGELHLEICLKDLEED
Sbjct: 513 EESGEHIVAGAGELHLEICLKDLEED 538
Score = 146 bits (353), Expect = 2e-35
Identities = 67/82 (81%), Positives = 73/82 (89%)
Frame = +2
Query: 14 KMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRYVE 193
+MVPTSDKGRFYAFGRVFSGKV +GQK RIMGP++ PGKKEDLY KTIQRTILMMGRY+E
Sbjct: 374 EMVPTSDKGRFYAFGRVFSGKVASGQKVRIMGPHYVPGKKEDLYLKTIQRTILMMGRYIE 433
Query: 194 AIEDVPSGNICGLVGVDQFLAR 259
I DVP GNI GLVGVDQFL +
Sbjct: 434 PIVDVPCGNIVGLVGVDQFLVK 455
Score = 133 bits (322), Expect = 1e-31
Identities = 60/90 (66%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Frame = +3
Query: 510 ACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNP 686
ACIP+KKS+PVVSYRE V+++S+Q+CLSKSPNKHNRLFM A P+ + LPEDID+G +NP
Sbjct: 540 ACIPLKKSEPVVSYRECVSDKSNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINP 599
Query: 687 RDDFKTRARYLTEKYEYDVTEARKICALAP 776
R DFK RARYL + Y +DV EARKI + P
Sbjct: 600 RQDFKIRARYLADTYGWDVNEARKIWSFGP 629
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 78.2 bits (184), Expect = 7e-15
Identities = 35/84 (41%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Frame = +1
Query: 256 KTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 426
KT TIT + A+ + +KF+ +++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 429 KTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKMLDGLRKVNKSYPLLTTK 488
Query: 427 NEESGEHIVAGAGELHLEICLKDL 498
EESGEH++ G GEL+L+ + DL
Sbjct: 489 VEESGEHVILGTGELYLDCIMHDL 512
Score = 70.1 bits (164), Expect = 2e-12
Identities = 34/87 (39%), Positives = 52/87 (59%)
Frame = +3
Query: 516 IPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDD 695
I IK +DPV+++ ETV E S C +++PNK N++ M A+P+ GL EDI+ +V +
Sbjct: 519 IDIKVADPVIAFCETVVETSSLKCFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWN 578
Query: 696 FKTRARYLTEKYEYDVTEARKICALAP 776
K + KY++D+ AR I A P
Sbjct: 579 KKKLGEFFQTKYDWDLLAARSIWAFGP 605
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/82 (36%), Positives = 45/82 (54%)
Frame = +2
Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181
++ +K P+ D F+ FGRV SG + GQ+ RI+G N+T +ED + R +
Sbjct: 344 VHTTKQYPSQDATAFHVFGRVMSGTLYAGQQVRILGENYTMEDEEDSRVGIVGRLWIAEA 403
Query: 182 RYVEAIEDVPSGNICGLVGVDQ 247
RY + VP+GN + GVDQ
Sbjct: 404 RYNIEVNRVPAGNWVLIEGVDQ 425
>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 34.7 bits (76), Expect = 0.084
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 361 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 483
DL + + + R + DP + ++ES E I++G GELHL++
Sbjct: 36 DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 33.5 bits (73), Expect = 0.20
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 32 DKGRFYAFGRVFSGKVVTGQKARIMGPNFTP 124
+K F AF RV+SG + GQ+ I+GP P
Sbjct: 498 NKTHFMAFARVYSGTISRGQQLYILGPKHDP 528
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +3
Query: 522 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP--EDIDEGRVNPRDD 695
I+K+ Y+E + +E++ L + N+H+ + AQ P GL I+E + N R
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275
Query: 696 FK 701
FK
Sbjct: 276 FK 277
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 32.7 bits (71), Expect = 0.34
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +2
Query: 98 RIMGPNFTPGKKEDLYEKTIQRTILMMGRYVEAI-EDVPSGNICGLVGVDQF----LARL 262
+++ P T GK + RT +M EAI EDVPSG + GL + L R
Sbjct: 2133 KVIQPETTSGKSTIATSQDYHRTTVMDLFREEAIKEDVPSGLLQGLTQIPSSSPTNLGRA 2192
Query: 263 VPSPLSRMP 289
P+PL+ P
Sbjct: 2193 TPTPLTSTP 2201
>SB_24564| Best HMM Match : Rad50_zn_hook (HMM E-Value=6.6)
Length = 263
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 60 AFSLARLLPDKKLASWDQTLHLERKRTCMRRLSSV 164
A S++RL P + A W QT+H R R+ R+ SV
Sbjct: 182 AQSVSRLPPIYRRAEWAQTVHRARSRSIPARVESV 216
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 442 EHIVAGAGELHLEICLKDLE 501
EH++ AGE+HL+ C+ DL+
Sbjct: 2 EHVIIAAGEVHLQRCVDDLK 21
Score = 27.9 bits (59), Expect = 9.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 510 ACIPIKKSDPVVSYRETV 563
AC+ + SDP++ +RETV
Sbjct: 25 ACVELNVSDPIIPFRETV 42
>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1554
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = -2
Query: 425 IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 318
I C MG D RLR ST L R F+GS T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 407 SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 273
S+ RR +P T GR+ FLG+ + R T NF+ F+ F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733
>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
Length = 160
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 409 PMVQCINEESGEHIVAGAGELHLEICLKDLEE 504
P Q + E EH+VA +G+L E C K L +
Sbjct: 26 PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 549 YRETVAEESDQLCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 692
Y+ + L K N H+ LF K + +P L ED++EG V D
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 570 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTR 707
E D+ CL + P + M P+ D GR PRDD K +
Sbjct: 51 EGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRDGPRDDEKQK 96
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/54 (37%), Positives = 28/54 (51%)
Frame = +1
Query: 481 ICLKDLEEDLLAFQSRSLTLSCRTVRP*LRNRTSSVSQSRPTSTTVCS*RLSPC 642
+C+ E +FQ SL L C +R L+N + S S TS +CS +LS C
Sbjct: 406 LCVTTEESWSSSFQLTSLDLLCSVLRLALKNASQETSTSTFTS-QMCS-KLSQC 457
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 600 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 692
PN N F+KA P+ DG D + G + RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443
>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
Length = 165
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 370 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 492
++V+ L A DP + +N S H A G+LH CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156
>SB_53389| Best HMM Match : Exo_endo_phos (HMM E-Value=6.3e-10)
Length = 774
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 340 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 375
>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
Length = 232
Score = 27.9 bits (59), Expect = 9.7
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 543 VSYRETVAEESDQLCLS-KSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 692
V +R + +D L+ + N H+ LF K + +P L ED++EG V D
Sbjct: 29 VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 81
>SB_17390| Best HMM Match : Exo_endo_phos (HMM E-Value=3.1e-13)
Length = 851
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 411 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 446
>SB_6247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 60 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 95
>SB_1162| Best HMM Match : Exo_endo_phos (HMM E-Value=5.3e-08)
Length = 285
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 139 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 174
>SB_51484| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0036)
Length = 283
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 32 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 67
>SB_42310| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 940
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 60 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 95
>SB_30214| Best HMM Match : Exo_endo_phos (HMM E-Value=6.1e-11)
Length = 509
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 352 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 387
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
Frame = +3
Query: 636 PMPDGLPEDIDEGR----VNPR 689
P+PDG+ E+IDEG+ +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742
>SB_14841| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1821
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 545 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 580
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 1006 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 1041
>SB_9417| Best HMM Match : FragX_IP (HMM E-Value=0)
Length = 875
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 125 GKKEDLYEKTIQRTILMMGRYVE-AIEDVPSGNICGLVGVDQFLA 256
G+ DL + QR M R ++ AI SG++CG+V ++ LA
Sbjct: 637 GRSIDLNKLVTQRLNGFMTRSLDYAISRFESGDLCGIVDLENLLA 681
>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = +1
Query: 397 AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEED 507
AK DP + C NE+SGEH + GE +L I ++ +++D
Sbjct: 7 AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKD 45
>SB_6629| Best HMM Match : Lipase_GDSL (HMM E-Value=2.2)
Length = 215
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 144 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 179
>SB_3943| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 501 GGPACIPIKKSDPVVSYRETVAEESDQLCLS-KSPN 605
GG C+ I+ S V+ +E V E+ + +CL + PN
Sbjct: 257 GGGVCVYIRSSINCVNRKEIVPEDVEAVCLEIRKPN 292
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,940,430
Number of Sequences: 59808
Number of extensions: 569826
Number of successful extensions: 1484
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1483
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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