Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0726
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)             148   4e-36
SB_94| Best HMM Match : No HMM Matches (HMM E-Value=.)                 33   0.14 
SB_14193| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)                     29   2.3  
SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_38077| Best HMM Match : DUF1634 (HMM E-Value=5.2)                   29   4.1  
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)                 28   5.4  
SB_33909| Best HMM Match : FH2 (HMM E-Value=0)                         28   5.4  
SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)                 28   5.4  
SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_33828| Best HMM Match : rve (HMM E-Value=3.9e-20)                   28   5.4  
SB_24579| Best HMM Match : rve (HMM E-Value=0.085)                     28   5.4  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)                 28   7.1  
SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6)                   28   7.1  
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)                27   9.4  

>SB_56046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 674

 Score =  148 bits (358), Expect = 4e-36
 Identities = 61/81 (75%), Positives = 74/81 (91%)
 Frame = +1

Query: 265 DNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDKGHVYDVLKNWPETDVRAIVVT 444
           D   E+MPIVYTPTVGLAC+K+G+++RRPRGLFI+IHDKGH+ D++ NWP T+V+AIV+T
Sbjct: 139 DYTEELMPIVYTPTVGLACRKYGMIFRRPRGLFISIHDKGHIRDIVSNWPTTEVKAIVMT 198

Query: 445 DGERILGLGDLGACGMGIPVG 507
           DGERILGLGDLG CGMGIPVG
Sbjct: 199 DGERILGLGDLGCCGMGIPVG 219



 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 30/50 (60%), Positives = 35/50 (70%)
 Frame = +3

Query: 474 LGRMRDGHPCGQLALYTALGGIKPHQCLPITIDVGTNTQSMLDDPLYIGL 623
           LG    G P G+LALYT  GGI P  CLP+ IDVGTN + +LDDP YIG+
Sbjct: 209 LGCCGMGIPVGKLALYTVCGGIDPEGCLPVMIDVGTNNEELLDDPFYIGV 258



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 30/61 (49%), Positives = 36/61 (59%)
 Frame = +2

Query: 71  GYGFYHRRASVLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEHLF 250
           G  F      +LGIHGLLPP V +QE Q +     + R  N L KYI LM LL+RNE LF
Sbjct: 74  GLAFTLEERQILGIHGLLPPCVISQEIQAQRVYRELQRKPNDLEKYIQLMALLERNESLF 133

Query: 251 Y 253
           +
Sbjct: 134 F 134



 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 30  LSGLDHLKHPGLNKGMAFTIEERQSWGSTG 119
           + G D ++   LNKG+AFT+EERQ  G  G
Sbjct: 60  IRGTDIMRDSHLNKGLAFTLEERQILGIHG 89


>SB_94| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 132 ESRRKRSRLNYASSRSTDTKIHLTSTSILWGSWTAMSI 245
           ++RRKRS     SSR  + K+ L  T  L+ SW  +S+
Sbjct: 179 QNRRKRSEFKIISSREEEKKLSLAKTCKLFQSWPKLSL 216


>SB_14193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 475 LGACGMGIPVGNSRSTPRSEASSRISVCPSLSTWVR 582
           LG  G+ +PVGN R  P   A+S      S+  W R
Sbjct: 197 LGRRGLALPVGNPRDIPVCVAASSSEFVSSIRIWTR 232


>SB_59754| Best HMM Match : rve (HMM E-Value=8e-19)
          Length = 1065

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 577 PTSIVMGRH*CGLMPPSAV*SASCPQGCPSRMRPSRQDPEYVLRRLQQWRGRPSPASS*E 398
           P+ I+MGR  C  +P             P  +RP + D E +L+R Q++R   S   +  
Sbjct: 797 PSEILMGRKLCNKLP-----------SVPENLRPRKIDQEQLLKREQEYREHYSSNYNSR 845

Query: 397 HR 392
           HR
Sbjct: 846 HR 847


>SB_29928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 290 LCTLRRLAWPVRSSALCTADQGASSSRSTIRDMYTM 397
           +C  R    PVR+SA+ T ++   SSR+TI    T+
Sbjct: 165 ICKDRVFMCPVRTSAVVTGEESTLSSRNTISSADTL 200


>SB_38077| Best HMM Match : DUF1634 (HMM E-Value=5.2)
          Length = 92

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 480 RMRDGHPCGQLALYTALGGIKPHQCLPITIDVGTNTQSMLDDP 608
           R R  +    LAL  ALGGI    CL + I +G +T+++   P
Sbjct: 44  RKRSAYSIASLALADALGGIAA-VCLAVFIALGHDTRAVFSAP 85


>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
          Length = 1246

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 493  PSRMRPSRQDPEYVLRRLQQWRGRPSPASS*EHR 392
            P  +RP + D E +L+R Q++R R S   +  HR
Sbjct: 1138 PENLRPRKIDQEQLLKREQEYRERYSSNYNSHHR 1171


>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1063

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 493 PSRMRPSRQDPEYVLRRLQQWRGRPSPASS*EHR 392
           P  +RP + D E +L+R Q++R R S   +  HR
Sbjct: 400 PENLRPRKIDQEQLLKREQEYRERYSSDYNSRHR 433


>SB_19811| Best HMM Match : RVT_1 (HMM E-Value=3.5e-32)
          Length = 670

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 493 PSRMRPSRQDPEYVLRRLQQWRGRPSPASS*EHR 392
           P  +RP + D E +L+R Q++R R S   +  HR
Sbjct: 620 PENLRPRKIDQEQLLKREQEYRERYSSDYNSRHR 653


>SB_3041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 939

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 493 PSRMRPSRQDPEYVLRRLQQWRGRPSPASS*EHR 392
           P  +RP + D E +L+R Q++R R S   +  HR
Sbjct: 791 PENLRPRKIDQEQLLKREQEYRERYSSNYNSRHR 824


>SB_33828| Best HMM Match : rve (HMM E-Value=3.9e-20)
          Length = 298

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 493 PSRMRPSRQDPEYVLRRLQQWRGRPSPASS*EHR 392
           P  +RP + D E +L+R Q++R R S   +  HR
Sbjct: 156 PENLRPRKIDQEQLLKREQEYRERYSSNYNSRHR 189


>SB_24579| Best HMM Match : rve (HMM E-Value=0.085)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 493 PSRMRPSRQDPEYVLRRLQQWRGRPSPASS*EHR 392
           P  +RP + D E +L+R Q++R R S   +  HR
Sbjct: 92  PENLRPRKIDQEQLLKREQEYRERYSSNYNSRHR 125


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +1

Query: 502 VGNSRSTPRSEASSRISVCPSLSTWVRTPSRCWTTRCTSG 621
           +G+  STPRS ASSR     S+ T  +T  +C TTR + G
Sbjct: 704 LGSLPSTPRSRASSRGRARGSVKT-TKTTKKC-TTRKSRG 741


>SB_13658| Best HMM Match : MbeD_MobD (HMM E-Value=2.3)
          Length = 529

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/28 (64%), Positives = 18/28 (64%)
 Frame = +1

Query: 511 SRSTPRSEASSRISVCPSLSTWVRTPSR 594
           SRSTPRS A SRI   PS ST   T SR
Sbjct: 435 SRSTPRSRAGSRIRT-PSTST-TTTSSR 460


>SB_46336| Best HMM Match : DUF1518 (HMM E-Value=5.6)
          Length = 187

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
 Frame = +1

Query: 406 NWPETDVRAIVVTDGERILGLGDLG-----AC----GMGIPVGNSRSTPRSEASSRISVC 558
           NW   D RA V T G+    +G LG      C    G G P+ +S  +P       ++  
Sbjct: 44  NWLAGD-RARVFTTGDMDALVGSLGRASKKVCPYITGSGTPLPSSPVSPLPSPVPAVAAT 102

Query: 559 PSLSTWVRTPSRCW-TTRC 612
           PS +    TP+ C  TT C
Sbjct: 103 PSQTYCTSTPTSCTPTTTC 121


>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
          Length = 663

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 358 LFITIHDKGHVYDVLKNWPE 417
           L IT H+ GH+Y  LK W +
Sbjct: 364 LIITHHEMGHIYYFLKYWDQ 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,561,365
Number of Sequences: 59808
Number of extensions: 528651
Number of successful extensions: 1475
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1473
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)