Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0725
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30860.1 68417.m04381 SET domain-containing protein low simil...    28   5.0  
At5g18980.1 68418.m02255 expressed protein                             28   6.6  
At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein ...    28   6.6  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    27   8.7  
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co...    27   8.7  

>At4g30860.1 68417.m04381 SET domain-containing protein low
           similarity to IL-5 promoter REII-region-binding protein
           [Homo sapiens] GI:12642795; contains Pfam profile
           PF00856: SET domain
          Length = 497

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 479 SCPCRVTIIVTSCSAVCPRSCTSR 408
           SC CRV  I  S    CP SC +R
Sbjct: 297 SCVCRVQCISCSKGCSCPESCGNR 320


>At5g18980.1 68418.m02255 expressed protein
          Length = 835

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +2

Query: 335 IQRVNDG----ESKASVARDIGVPESTLRGWCKNED 430
           ++R++D      S+ + ARD  VPE+TL  W KN D
Sbjct: 169 LKRISDSIFKPRSREATARDCVVPETTLETW-KNSD 203


>At1g68130.1 68414.m07782 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 419

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +1

Query: 283 KG*ATYARSDARRQNRGHTTGQRRRVQGIGRTR-HRRARVHSARLVQERGQTALHDVTII 459
           KG  +  R +ARR+ +              R R H RA +H A L +E     +    + 
Sbjct: 307 KGETSLEREEARRETKRQIEIAELEFAEAKRIRQHARAELHKAHLFREEASRRISATMMQ 366

Query: 460 VTRHGQEQ 483
           +T H  +Q
Sbjct: 367 ITCHNCKQ 374


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 574 SIPTSTATQLPPAPADASVELTTKRSEPSPIP 669
           S PT++ T  PP PA +S   TT  S P P P
Sbjct: 17  SPPTNSTTTTPP-PAASSPPPTTTPSSPPPSP 47


>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
           contains Pfam profile PF00566: TBC domain
          Length = 771

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/88 (26%), Positives = 36/88 (40%)
 Frame = +2

Query: 227 KIVNKTHAGCNKRVAIMATKGKRPMRALTPGDKIEAIQRVNDGESKASVARDIGVPESTL 406
           K V+K       R ++ A +    +R    GD     Q      S AS        ES+ 
Sbjct: 117 KNVHKVQLWAEIRPSLQAIEDLMSVRVKMKGDSTNGEQEAQKLNSLASTDET----ESS- 171

Query: 407 RGWCKNEDKLRYMTSRLSSPDTDKSNDG 490
           +G C+N+ +  +  +  S P  D S+DG
Sbjct: 172 KGVCENDSEDEFYDAERSDPIQDGSSDG 199


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,971
Number of Sequences: 28952
Number of extensions: 250010
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)