Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0720
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    36   0.029
At5g45310.1 68418.m05562 expressed protein                             33   0.27 
At5g42570.1 68418.m05183 expressed protein low similarity to SP|...    33   0.27 
At2g46520.1 68415.m05798 cellular apoptosis susceptibility prote...    32   0.36 
At4g35070.1 68417.m04978 expressed protein                             31   1.1  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    30   1.4  
At4g22950.1 68417.m03313 MADS-box protein (AGL19) MADS-box prote...    29   2.5  
At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family pr...    29   2.5  
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei...    29   2.5  
At5g38690.1 68418.m04678 expressed protein                             29   4.4  
At5g55520.1 68418.m06915 expressed protein weak similarity to ph...    28   5.8  
At5g27630.1 68418.m03310 acyl-CoA binding family protein similar...    28   5.8  

>At1g79280.1 68414.m09242 expressed protein weak similarity to
           Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 21/56 (37%), Positives = 35/56 (62%)
 Frame = +1

Query: 301 EQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEAL 468
           E+ ++A+E     REK + +++ESE+  EEM SV+++N     + SQL I+H   L
Sbjct: 713 ERDKLAMEA-NFAREKLEGIMKESERKREEMNSVLARNI----EFSQLIIDHQRKL 763


>At5g45310.1 68418.m05562 expressed protein
          Length = 352

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
 Frame = +1

Query: 205 GNLTGNFVNFPYIFYCNYFKMMTRSIKSRQVDEQLRIALEQL--------KNTRE---KY 351
           G++ G+ + F   F   +F  + R     Q    LR  LE L        KN RE   +Y
Sbjct: 64  GSIWGSVLLFT--FPIRFFASIPRERLLEQSIYDLRYELESLEWNRKEIEKNLREAIKEY 121

Query: 352 DILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQK 483
            I+ Q+ ++ E+E    ISK   L+ +L +L  E+ + +E+N K
Sbjct: 122 RIMEQDLDELEDEHDEAISKIEKLEAELQELKEENLQLMEVNGK 165


>At5g42570.1 68418.m05183 expressed protein low similarity to
           SP|P51572 B-cell receptor-associated protein 31 (6C6-AG
           tumor-associated antigen) (DXS1357E) {Homo sapiens}
          Length = 218

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 17/68 (25%), Positives = 33/68 (48%)
 Frame = +1

Query: 301 EQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQ 480
           E+++   E++   + K   L  ESE   +E+     +   L+KQ     +E+   LE NQ
Sbjct: 140 EEVKALGEEIAALKAKIKTLESESESKGKELKGAQGETEALRKQADGFLMEYDRLLEDNQ 199

Query: 481 KLQDTINT 504
            L++ + +
Sbjct: 200 NLRNQLES 207


>At2g46520.1 68415.m05798 cellular apoptosis susceptibility protein,
           putative / importin-alpha re-exporter, putative similar
           to cellular apoptosis susceptibility protein [Homo
           sapiens] GI:3598795, SP|Q9ERK4 Importin-alpha
           re-exporter (Chromosome segregation 1-like protein)
           (Cellular apoptosis susceptibility protein) {Mus
           musculus}; contains Pfam profiles PF03810: Importin-beta
           N-terminal domain, PF03378: CAS/CSE protein C-terminus
          Length = 972

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 241 IFYCNYFKMMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNE-EEMLSVISKN 414
           IF  NY + + R ++   VD + RIA E LK     Y   + E    E + +LS  S N
Sbjct: 368 IFEMNYIEFIRRDMEGSDVDTRRRIACELLKGLATNYKTQVTEVVSLEIQRLLSSFSAN 426


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
 Frame = +1

Query: 295 VDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEH---SEA 465
           + EQ +  +E +    E   +LL    Q EEEM   ++KN +L+  L ++ +E+      
Sbjct: 100 LQEQRKREMEMILRKMESKALLLMS--QKEEEMSKALNKNMELEDLLRKMEMENQTWQRM 157

Query: 466 LEINQKLQDTINTFFNAV 519
              N+ +  T+NT    V
Sbjct: 158 ARENEAIVQTLNTTLEQV 175



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/76 (26%), Positives = 40/76 (52%)
 Frame = +1

Query: 271 TRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFI 450
           ++S  + Q+++Q +   + +K   E+   +LQE  + E EM+ +    +     +SQ   
Sbjct: 70  SQSFLAAQMEKQKQEIDQFIKIQNERLRYVLQEQRKREMEMI-LRKMESKALLLMSQKEE 128

Query: 451 EHSEALEINQKLQDTI 498
           E S+AL  N +L+D +
Sbjct: 129 EMSKALNKNMELEDLL 144


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = +1

Query: 265  MMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQE-----SEQNEEEMLSVISKNTDLKK 429
            M TRS   R     LR   + L N +E+Y +LL E     +E  E+  LSV S   D+ K
Sbjct: 1757 MQTRSESVRSRMLSLRSVKQMLDNLKEEYLVLLAETIPFLAELLEDVELSVKSLAQDIIK 1816

Query: 430  QLSQL 444
            Q+ ++
Sbjct: 1817 QMEEM 1821


>At4g22950.1 68417.m03313 MADS-box protein (AGL19) MADS-box protein
           AGL14, Arabidopsis thaliana, gb:U20184
          Length = 219

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/48 (29%), Positives = 32/48 (66%)
 Frame = +1

Query: 289 RQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQ 432
           +Q++ QL  +L +++   +KY +L +E E+ + E  +++ +N DLK++
Sbjct: 124 QQLENQLDRSLSRIR--AKKYQLLREEIEKLKAEERNLVKENKDLKEK 169


>At3g54870.1 68416.m06079 armadillo/beta-catenin repeat family
           protein / kinesin motor family protein kinesin,
           Syncephalastrum racemosum, AJ225894
          Length = 941

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/74 (24%), Positives = 39/74 (52%)
 Frame = +1

Query: 280 IKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHS 459
           IK  ++ +     +++L+  +  YD LLQ+ E+  EE+  +  +    +KQ  Q+    S
Sbjct: 683 IKLEELSQMYESTVDELQTVKLDYDDLLQQKEKLGEEVRDMKERLLLEEKQRKQM---ES 739

Query: 460 EALEINQKLQDTIN 501
           E  ++ + L+++ N
Sbjct: 740 ELSKLKKNLRESEN 753


>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
           protein-related similar to matrix-localized MAR DNA
           binding protein MFP1 GI:1771158 from [Lycopersicon
           esculentum]
          Length = 726

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
 Frame = +1

Query: 292 QVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDL----KKQLSQLFIEHS 459
           +++ +L I  E+ K  +E+Y+  L   +Q  E   S ++   DL    K +L  +  E  
Sbjct: 473 KLESELAIVHEEWKEAKERYERNLDAEKQKNEISASELALEKDLRRRVKDELEGVTHELK 532

Query: 460 EALEINQKLQDTINTFFNAV 519
           E+   NQ LQ  +   +  V
Sbjct: 533 ESSVKNQSLQKELVEIYKKV 552


>At5g38690.1 68418.m04678 expressed protein
          Length = 572

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +1

Query: 295 VDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEAL-E 471
           +D Q   ++E+ K  +EK +    + +Q ++++   +++    K  +  L  EH   +  
Sbjct: 406 IDSQNIESVERKKEAKEKINAAKDKEKQLKQKLQDELAQAVKAKNGIPLLITEHDAIVSR 465

Query: 472 INQKLQDTINTFFNAV 519
           IN + Q+  +   NA+
Sbjct: 466 INAETQEVYSEMQNAI 481


>At5g55520.1 68418.m06915 expressed protein weak similarity to
           phragmoplast-associated kinesin-related protein 1
           [Arabidopsis thaliana] GI:8745333; expression supported
           by MPSS
          Length = 802

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 304 QLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQK 483
           Q+R +++  KNT    + L +E E+  E     IS   DL+  +      H+E LEI  K
Sbjct: 518 QMRKSIDFTKNTENNSEALEEERERWTEMESEWISLTDDLRMDIDS-HRRHAEDLEIELK 576


>At5g27630.1 68418.m03310 acyl-CoA binding family protein similar to
           RING finger rngB protein, cytosolic - Dictyostelium
           discoideum, PIR:S68824; contains Pfam profiles PF01344:
           Kelch motif, PF00887: Acyl CoA binding protein (ACBP)
          Length = 648

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 16/89 (17%)
 Frame = +1

Query: 271 TRSIKSR-QVDEQLRIALEQLKNTREKYDILLQESE----QNEEEMLSVISKNTDLKKQL 435
           TR I+S  +V+ +    +  LK+ +E+ +  L + +    Q +EE+  + ++NT+L K+L
Sbjct: 512 TRDIESEIKVEGKADRIITTLKSEKEEVEASLNKEKIQTLQLKEELAEIDTRNTELYKEL 571

Query: 436 ----SQLFIEHS-------EALEINQKLQ 489
               +QL  E S       E  E+ QKLQ
Sbjct: 572 QSVRNQLAAEQSRCFKLEVEVAELRQKLQ 600


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,625,140
Number of Sequences: 28952
Number of extensions: 213511
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)