Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0716
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 40 0.002
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 35 0.064
SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.19
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08) 33 0.19
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 1.0
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 31 1.4
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 30 1.8
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 30 1.8
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 30 1.8
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 30 1.8
SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41) 30 1.8
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_29318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 534 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGK 653
+H TFDGRH+ F G C Y LA D + + + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 537 HIFTFDGRHLTFPGNCRYVL 596
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 35.1 bits (77), Expect = 0.064
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = +3
Query: 537 HIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLIQ 638
H+ TFD + FPG C YVLA D D FT++ Q
Sbjct: 1651 HVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMSQ 1688
>SB_26363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1054
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Frame = +1
Query: 403 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQET 582
W+ +KQL DF D LALL + + + V +SA L +N T+ S ET
Sbjct: 793 WTLWKQLDDLDFADDLALLSHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNET 852
Query: 583 -VATYWRTTTSIETSRC*SNF------KTESPRLLFWKIRAEYHRIERKW 711
+ ++T + K R K RA +H+I+ W
Sbjct: 853 PITVQGEALEEVDTFTYLGSILDNQGGKDADIRTRIGKARAAFHQIKNIW 902
>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
Length = 421
Score = 33.5 bits (73), Expect = 0.19
Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Frame = +1
Query: 403 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQET 582
W+ +KQL DF D LALL + + + V +SA L +N T+ S ET
Sbjct: 149 WTLWKQLDDLDFADDLALLSHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNET 208
Query: 583 -VATYWRTTTSIETSRC*SNF------KTESPRLLFWKIRAEYHRIERKW 711
+ ++T + K R K RA +H+I+ W
Sbjct: 209 PITVQGEALEEVDTFTYLGSILDNQGGKDADIRTRIGKARAAFHQIKNIW 258
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 1.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 537 HIFTFDGRHLTFPGNCRYVLAHD 605
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 30.7 bits (66), Expect = 1.4
Identities = 27/117 (23%), Positives = 51/117 (43%)
Frame = +1
Query: 235 AACGLSELITAVTSLVQFLRTQLNEFGIINTTPDFANFFAAPSSIKSAPSLAGEATWSFF 414
++ LS+ +T+ +SL FL + + + ++ ++F + SS+ + +
Sbjct: 400 SSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSDFLTSCSSLSDFLT 459
Query: 415 KQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQETV 585
FP +L + S P D + SSS+L ++SS S TS S +V
Sbjct: 460 SSSSLSVFPTPSSLPSDFLTSSSLPSDFLTSSSSLSDFLTSSSSLSDFLTSSSSLSV 516
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 403 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQET 582
W+ +KQL DF D LA L + + + V +SA L +N T+ S ET
Sbjct: 113 WTLWKQLDDFDFADDLAFLSHTQQQIQEKTNFVADNSARLGLNINRGKSKMFKTNASSET 172
Query: 583 VAT 591
T
Sbjct: 173 PIT 175
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 403 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQET 582
W+ +KQL DF + LALL + + + V +SA L +N T+ S ET
Sbjct: 221 WTLWKQLDDLDFANDLALLSHTQQQMQEKTNIVADNSARLGLNINRGKSKVFKTNASNET 280
Query: 583 VAT 591
T
Sbjct: 281 PIT 283
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +1
Query: 403 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQET 582
W+ +KQL DF D LALL + + + V ++A L +N T+ S ET
Sbjct: 347 WTLWKQLDYLDFADDLALLSHTQQQMQEKTNIVADNAARLGLNINRGKSKVFKTNASNET 406
Query: 583 VAT 591
T
Sbjct: 407 PIT 409
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 542 LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 637
L VR+ PP L RKL+ R+ P+R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_4921| Best HMM Match : Myosin_head (HMM E-Value=7.39998e-41)
Length = 1017
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 RYCTAISRNCCQRRKAEI-WPKRSTPTFRR-NSVTRNAMMRRSCV 242
RY T + +N RR + WP S P FRR NS+ +N R C+
Sbjct: 719 RYFTNLKKNLPSRRPLDTYWPSAS-PLFRRTNSILKNMYHRWRCM 762
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 537 HIFTFDGRHLTFPGNCRYVLA-HDH----VDRNFTLLIQLQNGKPKALIL 671
H TFD R + G C YVL+ H H + FT+ I++ + + LI+
Sbjct: 857 HFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSRQLIV 906
>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 29.1 bits (62), Expect = 4.2
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 7/110 (6%)
Frame = +1
Query: 403 WSFFKQLYSGDFPDILALLRAYRPRSINPLDEVPSSSALLL*TVNTSSRSTVATSPSQET 582
W+ +KQL DF D LALL + + + V +SA L +N T+ S ET
Sbjct: 327 WTLWKQLDDLDFAD-LALLFHTQQQMQEKTNIVADNSAKLGLNINRGKSKMFKTNASNET 385
Query: 583 -VATYWRTTTSIET-----SRC*SNFKTESP-RLLFWKIRAEYHRIERKW 711
+ T ++T S T++ R K RA +H+++ W
Sbjct: 386 PITVQGETLEEVDTFTYLGSILDKQGGTDADIRTRIGKARAAFHQLKNIW 435
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 27.9 bits (59), Expect = 9.6
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = +3
Query: 117 YCTAISRNCCQRRKAEIWPKRSTPTFRRNSVTRNAMMRRSCVWS--IRVDHSCYISRPVL 290
Y T S+N RK T N+VT N ++SCV+ IR+ + P +
Sbjct: 660 YNTYASQNAAHHRKGASLRSLVTRFSVPNNVTTN---KKSCVYEGEIRMHGDAWSPGPCI 716
Query: 291 EDSAERIWHYQHDARLCELLRCPKLN*VRSV 383
+ H + C L CP LN RS+
Sbjct: 717 PEC-----HCWNGKVKCANLECPDLNCARSI 742
>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1417
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 496 EVPSSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSRC*SNFKTESP 657
E +SS+ T TSS +TSP Q T + +T+TS + + +T SP
Sbjct: 674 ETSTSSSKQTSTQQTSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTSPSQQTTSP 727
>SB_29318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 347 SSLPQAQLSPLRLLLERQRGASSNSCTP 430
S +P A L+P + ERQ A+SNSC+P
Sbjct: 5 SGIPAAVLTPAPV--ERQHVAASNSCSP 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,235,584
Number of Sequences: 59808
Number of extensions: 472969
Number of successful extensions: 1388
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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