Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0662
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)             42   8e-04
SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)                     30   2.5  
SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)                     29   4.3  
SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  

>SB_14362| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.065)
          Length = 215

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = +2

Query: 275 DDEYLLRYLRARNFVVPRAHKLLVRYCTFREQQRSLYEGVDLWGLVKV-QDAYEGSMFDR 451
           DDE LLRYLRAR   V  A  LL  +  F +    L +G++ + L  + +D +   +   
Sbjct: 75  DDEMLLRYLRARGHNVVAAFALLCSHIEFHKNNPELLKGLNAFELRYILEDGFPCVLPYM 134

Query: 452 PDVGRLPIFRF-GMWDPNEF 508
             VG   +  F GMWD + F
Sbjct: 135 DPVGSTIMVLFPGMWDTDTF 154


>SB_34554| Best HMM Match : RVT_1 (HMM E-Value=0.2)
          Length = 671

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 577 VLGGTVIVDLEGITLRHVATLTPTVAYQIVSLMG 678
           VL G + +DL G+TL  V  +T T A  +++  G
Sbjct: 227 VLSGDIAIDLVGVTLVQVTVVTNTSAISVMATTG 260


>SB_16019| Best HMM Match : AT_hook (HMM E-Value=1)
          Length = 429

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 137 GEHGRKPRTAGDGSGALQREP-SYQGDSDYGATTDDIQSRKCRPLRTDDE 283
           G  G + R A  G G ++ E    +    +G +TD+  + +C P RTD +
Sbjct: 139 GAQGSR-RGASSGMGVVEEEGVGMRASRTHGQSTDETSAMECTPERTDTD 187


>SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 529 AGMAMVEIGIRQPKLQVLGGTVIVDLEGITLRHVATLTPT 648
           AG      G  +P L   GG V++    ++LRH +T+T T
Sbjct: 605 AGFMADAFGSYEPSLYTSGGVVLLGAFLLSLRHCSTMTST 644


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,257,820
Number of Sequences: 59808
Number of extensions: 549446
Number of successful extensions: 1409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1409
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)