Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0602
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)                 30   1.9  
SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27)                 30   2.5  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         29   3.3  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         28   7.6  

>SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -2

Query: 236 DTLNWESLEVGYSEFLQWALSGDLDTFYENVRWQQWREDVIKLSATEAFTFY-PFLWVQS 60
           D+L+W      Y + L W  + D+   Y+++ W Q R     L   +    Y P  WVQ+
Sbjct: 199 DSLDWVQNRNVY-DLLDWVQNRDV---YDSLDWVQNRNVYDSLDWVQNRNVYDPLDWVQN 254

Query: 59  EEARTRKVISLTELW 15
            + + ++ +   ELW
Sbjct: 255 RKEKHKQPLQRFELW 269


>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
          Length = 876

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 409 IAGSGHPRLPRDPVSWTQRPEFAGVRALPI 320
           +A  G+PRLP +P +   R +F G R  PI
Sbjct: 834 MAPRGNPRLPMNPQAGIPRSQFRGARGSPI 863


>SB_44242| Best HMM Match : SATase_N (HMM E-Value=0.27)
          Length = 426

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/84 (17%), Positives = 34/84 (40%)
 Frame = -1

Query: 735 CMDKVIFYSNIRNLIFKKCSIQFLIINDTVAHKEQVAMREMNQLVNTEDSAWPIIQNWLK 556
           C+D+V+F   +   +  +C+    ++   V   E  + R   +L  +   A   +  W+ 
Sbjct: 327 CIDRVLFMGRLSRAVPTQCTHLKHVMQGVVTQTESTSSRGTPRLTRSSSVARRKVTYWIG 386

Query: 555 DATNHTELLPVNKDLAKPHFINYR 484
             +N    + V +   +P  +  R
Sbjct: 387 SDSNRMRSIYVYQSPVQPSLVGIR 410


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/59 (35%), Positives = 22/59 (37%)
 Frame = +3

Query: 216  TFPIQRIWRKIINQPVSSPRSPPLRAKITPATSSAMGKARTPANSGRCVQLTGSRGNRG 392
            T P    WR I  QP+S P S    AK  P  SS  G A T     R     G     G
Sbjct: 1732 TLPSAVDWRSIQAQPISGPVSTTCPAKCQP--SSVQGVATTATGRRRLHDSAGDGDGGG 1788


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = +2

Query: 158  RYLNHRIMPTEETQNIQLPD----FPNSAYLAQNNKPA 259
            RYLNH   P    QN+ +      FP  A+ AQ+N PA
Sbjct: 1159 RYLNHSCSPNLFVQNVFIDTHDLRFPWVAFFAQHNIPA 1196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,878,652
Number of Sequences: 59808
Number of extensions: 609492
Number of successful extensions: 1273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)