Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4104
         (519 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    24   0.82 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   0.82 
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    23   1.9  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   1.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   5.7  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  

>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 209 LKKSQSHNKYNTRPRQLHYRHAL 141
           L+K   +N+Y TR R++   HAL
Sbjct: 23  LEKEFHYNRYLTRRRRIEIAHAL 45


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 209 LKKSQSHNKYNTRPRQLHYRHAL 141
           L+K   +N+Y TR R++   HAL
Sbjct: 285 LEKEFHYNRYLTRRRRIEIAHAL 307


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 209 LKKSQSHNKYNTRPRQLHYRHAL 141
           L+K   +N Y TR R++   HAL
Sbjct: 23  LEKEFHYNHYLTRRRRIEIAHAL 45


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 209 LKKSQSHNKYNTRPRQLHYRHAL 141
           L+K    N+Y TR R++   HAL
Sbjct: 23  LEKEFHFNRYLTRRRRIEIAHAL 45


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 61  FLFIFYCFDVWTSSQPTW 8
           F  ++Y FDV T   P W
Sbjct: 111 FSLLYYEFDVATKEPPPW 128


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 197 EIFLTFLKVPLLTSKTCKLLLFYQNLQSPTDPYN 298
           EIF T +K P       +++ +Y + +    PYN
Sbjct: 407 EIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKPYN 440


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 197 EIFLTFLKVPLLTSKTCKLLLFYQNLQSPTDPYN 298
           EIF T +K P       +++ +Y + +    PYN
Sbjct: 407 EIFSTSMKDPAFYRIYKRIIDYYHSYKMHQKPYN 440


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 209 LKKSQSHNKYNTRPRQLHY 153
           L  + ++N YN   + LHY
Sbjct: 318 LSNNYNYNNYNNNYKPLHY 336


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/24 (25%), Positives = 16/24 (66%)
 Frame = -2

Query: 203 KSQSHNKYNTRPRQLHYRHALMAV 132
           K  ++N YN   ++L+Y++ ++ +
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYIINI 113


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 116  INNISKRPSERADSVVDADEYCIYY 190
            +  +S   S+ A  VVDA +   YY
Sbjct: 933  LQELSSWVSDNAHKVVDASDVWCYY 957


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,386
Number of Sequences: 438
Number of extensions: 2679
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)