Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3833
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.84 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.84 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 331 ELVCSPAPFFCSIVQVTTYLYGFCNLVNCPRHDSTTAEVHWL 206
           +L  + +P+F +  ++ T   G    ++C  H  T   V WL
Sbjct: 801 QLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWL 842


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 331 ELVCSPAPFFCSIVQVTTYLYGFCNLVNCPRHDSTTAEVHWL 206
           +L  + +P+F +  ++ T   G    ++C  H  T   V WL
Sbjct: 797 QLKVNSSPYFAAPSRLVTVKKGDTATLHCEVHGDTPVTVTWL 838


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 392 YVLHCLSLWAWHITWIYYIHLLA*NLFY 475
           Y    LS W    T IYYI +LA  LFY
Sbjct: 102 YATCVLSCW----TNIYYIIILAWALFY 125


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 392 YVLHCLSLWAWHITWIYYIHLLA*NLFY 475
           Y    LS W    T IYYI +LA  LFY
Sbjct: 155 YATCVLSCW----TNIYYIIILAWALFY 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,638
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)