Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3790
         (556 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.51 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   3.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   4.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   4.8  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   6.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   6.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   6.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   6.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.3  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.4  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.51
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 502 IAHSPPGVKWLLEPTDI 452
           + H PP  +W++EPTD+
Sbjct: 701 VVHVPP--RWIVEPTDV 715


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 488 WAVSNKKKTRGGARYPIR 541
           W + N  + R G RYP R
Sbjct: 355 WVMGNHDRVRVGTRYPGR 372


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -1

Query: 547 YRANWVPGPPSSFFFIAHSPPGVKWLLEPTDIYDVNAPPTLRYK 416
           Y  N+ P P   F  I    P ++++  PT       P   R++
Sbjct: 353 YYGNFPPRPMGPFVSIQEQIPRLRYIGPPTSFPRFIPPNAYRFR 396


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 203 SEYTENESISKRPKR 247
           S + ENES+ K P R
Sbjct: 379 SPHEENESVDKHPNR 393


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 310 DSQEVLPPFPNFDF 269
           D  E LPP PN D+
Sbjct: 315 DFDEFLPPPPNLDY 328


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 45  YSN*HTWHVGKL*N 4
           Y+N + WH GK+ N
Sbjct: 142 YNNYYIWHPGKIVN 155


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 304 QEVLPPFPNFDFFCLLMF 251
           +E +P FP +   C+L F
Sbjct: 197 KENMPEFPLYQLSCILFF 214


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 490 PPGVKWLLEPTD 455
           PP  +W+LEPTD
Sbjct: 678 PP--RWILEPTD 687


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = -1

Query: 547 YRANWVPGPPSSFFFIAHSPPGVKWLLEPTDIYDVNAPPTLRYK 416
           Y  N+ P P   F  I    P  +++  PT       P   R++
Sbjct: 353 YYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAYRFR 396


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = -1

Query: 547 YRANWVPGPPSSFFFIAHSPPGVKWLLEPTDIYDVNAPPTLRYK 416
           Y  N+ P P   F  I    P  +++  PT       P   R++
Sbjct: 353 YYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAYRFR 396


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = -1

Query: 547 YRANWVPGPPSSFFFIAHSPPGVKWLLEPTDIYDVNAPPTLRYK 416
           Y  N+ P P   F  I    P  +++  PT       P   R++
Sbjct: 353 YYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAYRFR 396


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = -1

Query: 547 YRANWVPGPPSSFFFIAHSPPGVKWLLEPTDIYDVNAPPTLRYK 416
           Y  N+ P P   F  I    P  +++  PT       P   R++
Sbjct: 342 YYGNFPPRPMGPFVSIQEQIPRFRYIGPPTSFPRFIPPNAYRFR 385


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 490 PPGVKWLLEPTDI 452
           PP  +W++EPTD+
Sbjct: 709 PP--RWIVEPTDV 719


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 45  YSN*HTWHVGKL*N 4
           Y+N + WH GK+ N
Sbjct: 142 YNNYYIWHPGKIVN 155


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = -3

Query: 107 PATTWLSTY*IRNTFLIYYIHIQISIHGMSENY 9
           P  TW S     N F  Y   I  S+ GM   Y
Sbjct: 181 PNVTWYSQCVTFNAFPTYTHEITYSLFGMIMMY 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,149
Number of Sequences: 438
Number of extensions: 3642
Number of successful extensions: 17
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)