Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3785
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    28   0.064
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    28   0.064
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    26   0.26 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   0.79 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   2.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   9.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 0.064
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 230 PPVRTCFKKNFFFSNYNAQNKIVHFEYNNMY 138
           P + +    N+ +SNYN  N   +  YNN Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNNNYNNNY 109


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 27.9 bits (59), Expect = 0.064
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 230 PPVRTCFKKNFFFSNYNAQNKIVHFEYNNMY 138
           P + +    N+ +SNYN  N   +  YNN Y
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNNYNNNYNNNY 109


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 230 PPVRTCFKKNFFFSNYNAQNKIVHFEYNN 144
           P + +    N+ +SNYN  N   +  YNN
Sbjct: 312 PKIISSLSNNYKYSNYNNYNNYNNNNYNN 340


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 230 PPVRTCFKKNFFFSNYNAQNKIVHFEYN 147
           P + +    N+ ++NYN   K +H+  N
Sbjct: 312 PKIISSLSNNYNYNNYNNNYKPLHYNIN 339


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 142 CMFFEYSLQEEENIICGFPP 83
           C+FF  ++     I+CG PP
Sbjct: 434 CVFFLTTIVSTTVILCGSPP 453


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 230 PPVRTCFKKNFFFSNYNAQNKIVHFEYNNMYVL 132
           P + +    N+ +SNYN  N      Y   Y++
Sbjct: 79  PKIISSLSNNYKYSNYNNYNNYNKKLYYKNYII 111


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 329  NGCPTLQTETHYCFMAEIGWVVV 261
            NGCP L     Y  + E  W +V
Sbjct: 1525 NGCPILYFTIQYRPINEFHWTLV 1547


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 329  NGCPTLQTETHYCFMAEIGWVVV 261
            NGCP L     Y  + E  W +V
Sbjct: 1521 NGCPILYFTIQYRPINEFHWTLV 1543


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 191 SNYNAQNKIVHFEYNN 144
           +NYN  N    + YNN
Sbjct: 320 NNYNYNNNNYKYNYNN 335


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 192 KKKVFFKASTYWW*DLL*VRTDRYHHPAY 278
           K+K    ++TY W  LL +  DR + P Y
Sbjct: 449 KRKSREGSTTYLWEFLLKLLQDREYCPRY 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,184
Number of Sequences: 438
Number of extensions: 3231
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)