Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3752
         (665 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128084-1|BAC87265.1| 1177|Homo sapiens protein ( Homo sapiens ...    30   6.5  
AB065594-1|BAC05822.1|  301|Homo sapiens seven transmembrane hel...    30   8.5  

>AK128084-1|BAC87265.1| 1177|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46205 fis, clone TESTI4010544. ).
          Length = 1177

 Score = 30.3 bits (65), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 449 FLTFLTRSTLLIVLLCFGLIYPIVGHPVYMYICIIYGCQLTIGLLVV 589
           F TFL+R   L+V   FGL+ P   +    ++ I Y   + + L+V+
Sbjct: 294 FWTFLSRIAFLMVFTFFGLLIPAHTYLYIEFVDIYYSLNIYLTLIVL 340


>AB065594-1|BAC05822.1|  301|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 301

 Score = 29.9 bits (64), Expect = 8.5
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
 Frame = +2

Query: 413 GYSELKKLHFRYFLTFLTRSTLLIVLLCFGL------IYPIVGHPVYMYI---CIIYGCQ 565
           G+S++  LH+  F  FL     L++L+C G+      I+P +  P+Y ++    ++  C 
Sbjct: 7   GFSDIPNLHWMLFSIFLL--MYLMILMCNGIIILLIKIHPALQTPMYFFLSNFSLLEICY 64

Query: 566 LTI----GLLVVWTS*G 604
           +TI     L+ +WT  G
Sbjct: 65  VTIIIPRMLMDIWTQKG 81


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,968,412
Number of Sequences: 237096
Number of extensions: 2228614
Number of successful extensions: 7548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7548
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7535049140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)