Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3744
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   1.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.5  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   7.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   7.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 451 KLHAHRFFKIHYW 489
           +L+ H+FF++H W
Sbjct: 62  ELYHHKFFQVHEW 74


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 55  VFIFLSII*NILVYNILATRPRFA 126
           VF +LS   N L+YNI++ + R A
Sbjct: 335 VFYYLSTTVNPLLYNIMSNKFREA 358


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 DLRMKNEENHNTIHIEKEVSL 436
           D+R K  E  N++ +  EVSL
Sbjct: 165 DIRYKWNEGPNSVGVSNEVSL 185


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 DLRMKNEENHNTIHIEKEVSL 436
           D+R K  E  N++ +  EVSL
Sbjct: 104 DIRYKWNEGPNSVGVSNEVSL 124


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  FNKVLNKKIYVYLFFYL*FKIYSYIIY*RPALASL 127
           F+++ +  +Y+  +FYL  ++  + +  RP   S+
Sbjct: 525 FDEIKHDMVYLQKYFYLFMEMDRFAVTLRPGSNSI 559


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/35 (22%), Positives = 20/35 (57%)
 Frame = +2

Query: 23  FNKVLNKKIYVYLFFYL*FKIYSYIIY*RPALASL 127
           F+++ +  +Y+  +FYL  ++  + +  RP   S+
Sbjct: 525 FDEIKHDMVYLQKYFYLFMEMDRFAVTLRPGSNSI 559


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 232 NFSNRSSSFGAYSKQTNKQIFPLYNISIEMLKMSHLLY 345
           N  NRS    +Y  Q   Q   L+N++ +   ++ LL+
Sbjct: 16  NQLNRSFYSASYPPQNRSQEEDLWNLATDRAGLAILLF 53


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -1

Query: 432 ETSFSMCIVLWFSSFFILKSDCSCNREW 349
           E   S+ ++L+FS F  L      + EW
Sbjct: 518 ERDLSLRMILYFSEFAYLGKPTKEDSEW 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,037
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)