Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3737
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.047
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.047
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 375  PQQVPAAALPPGYAYFAYQPPPTTYQYGVYPTY 473
            P+ V  AAL       ++QPPP T+  G+   Y
Sbjct: 1115 PEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGY 1147



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 368  GVGAPEPVARAESEGAVPGSVAHLVV 291
            G G P  V   ++E  VPGS A + V
Sbjct: 1197 GDGVPTTVTYCQTEEDVPGSPADIKV 1222


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.047
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +3

Query: 375  PQQVPAAALPPGYAYFAYQPPPTTYQYGVYPTY 473
            P+ V  AAL       ++QPPP T+  G+   Y
Sbjct: 1111 PEDVRCAALTSQSLQVSWQPPPNTHSNGIIQGY 1143



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 368  GVGAPEPVARAESEGAVPGSVAHLVV 291
            G G P  V   ++E  VPGS A + V
Sbjct: 1193 GDGVPTTVTYCQTEEDVPGSPADIKV 1218


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 423 AYQPPPTTYQYG 458
           ++Q PP TY+YG
Sbjct: 217 SFQGPPFTYRYG 228


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 391 QPLYLRDTRTSRTNRLPPHTNTECIPR 471
           QPL +          +P +TN++ IPR
Sbjct: 758 QPLSVSIPPPPSAQNVPQNTNSQAIPR 784


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = -3

Query: 355 PNLSPALSPKAPSRA--P*PTS**PP 284
           P  SP  SP+AP R   P P+   PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.130    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,191
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)