Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3736
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    20   9.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.4  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +1

Query: 91  DRSETSAIFFVSNSFQQLL 147
           DRS T+ ++ +S++FQQLL
Sbjct: 354 DRS-TNTMYVLSDNFQQLL 371


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -2

Query: 159 LDDRQQLLEAIRNEKNRTRLRPVKPKTAPETNTIIEV 49
           LDD   +L+ ++ E  R    P K  T P     I++
Sbjct: 344 LDDGIDILDDVKCEDERVISIPDKEITVPSNEETIDI 380


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 11 DGGLGSLGNTVVGTSIIVLVSGA 79
          +GG  S G  VVG +I  +V+GA
Sbjct: 5  NGGGSSAGVGVVGGTIASVVAGA 27


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 114  NRTRLRPVKPKTAP 73
            N+ +L+P KP T+P
Sbjct: 1122 NKPQLKPQKPFTSP 1135


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 115 KSHSSQTGQTKNGARNQY 62
           K +  Q+G+  N  RN+Y
Sbjct: 358 KQNVPQSGRVNNTQRNEY 375


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 115 FFVSNSFQQLLSVV*RCFSRHWWSG 189
           F  SN F+  L VV    + + W G
Sbjct: 344 FTTSNGFRSTLPVVSNLTAMNVWDG 368


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 115 FFVSNSFQQLLSVV*RCFSRHWWSG 189
           F  SN F+  L VV    + + W G
Sbjct: 313 FTTSNGFRSTLPVVSNLTAMNVWDG 337


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 115 FFVSNSFQQLLSVV*RCFSRHWWSG 189
           F  SN F+  L VV    + + W G
Sbjct: 364 FTTSNGFRSTLPVVSNLTAMNVWDG 388


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +1

Query: 115 FFVSNSFQQLLSVV*RCFSRHWWSG 189
           F  SN F+  L VV    + + W G
Sbjct: 313 FTTSNGFRSTLPVVSNLTAMNVWDG 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,221
Number of Sequences: 438
Number of extensions: 962
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)