Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3697
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.3  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   5.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 241 TRTKIPLFPPDPEPVHRCLPPLPRQVYCFLHPKPSPLRPAKVL 113
           T  ++P  PP        +P LPR + C   P      P K L
Sbjct: 633 TEERLPPLPPKRIRKMPSMPLLPRPISCHTTPDSFIEAPNKTL 675


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 366 PGSNSKFTFEKPRAPVKTVQRKPQEQ 443
           PG+N      +PR P   ++R+P+ +
Sbjct: 98  PGNNRPVYIPQPRPPHPRLRREPEAE 123



 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 366 PGSNSKFTFEKPRAPVKTVQRKPQEQ 443
           PG+N      +PR P   ++R+P+ +
Sbjct: 124 PGNNRPVYIPQPRPPHPRLRREPEAE 149


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 396 KPRAPVKTVQRKPQEQRPLKYXQQQLQK 479
           +P+   +  Q++PQ+Q+  +  QQQ Q+
Sbjct: 829 QPQQQQQQQQQQPQQQQQQQQQQQQQQR 856



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 393  EKPRAPVKTVQRKPQEQRPLKYXQQQLQK 479
            ++ R  + +  ++PQ+Q+  +  QQQ Q+
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQ 1465



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 426  RKPQEQRPLKYXQQQLQK 479
            ++PQ+Q+P    QQQ Q+
Sbjct: 1522 QQPQQQQPQPQQQQQQQQ 1539



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 426  RKPQEQRPLKYXQQQLQK 479
            +K Q+Q+P +  QQQ Q+
Sbjct: 1498 QKTQQQQPQQQQQQQQQQ 1515


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 12/52 (23%), Positives = 22/52 (42%)
 Frame = -2

Query: 193 RCLPPLPRQVYCFLHPKPSPLRPAKVLRENSTSFPLSRTEKLSVKNYNTDFC 38
           RC    PR+ +    P    L    +    +T+ P++ T+   V+N+    C
Sbjct: 298 RCFTGGPRKSHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLNSTC 349


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 79  TEKLSVKNYNTDF 41
           T+ L +KNYN D+
Sbjct: 99  TKNLEIKNYNIDW 111


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 323 VGTQPVQPGKVLDESRWAER 264
           V   PVQ   V+D+  W ER
Sbjct: 60  VQVSPVQENIVIDKRPWWER 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,065
Number of Sequences: 438
Number of extensions: 3387
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)