Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3696
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.3  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   7.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   7.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.5  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 DRHSVFEIHLDKSSRNNAIKY 173
           D+H  F++ ++ ++ NN  KY
Sbjct: 125 DQHKWFQMSINNTNNNNTNKY 145


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 518 ICASFVLLEVSMGFSNCLTTC 580
           +C  F++ + S+G S   +TC
Sbjct: 499 LCTKFLMHKDSLGLSTATSTC 519


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 442 EWVPPSS*ILPLSNHALQFAL 504
           E +PP+S ++PL    L FA+
Sbjct: 295 EIIPPTSLVVPLLGKYLIFAM 315


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 442 EWVPPSS*ILPLSNHALQFAL 504
           E +PP+S ++PL    L FA+
Sbjct: 295 EIIPPTSLVVPLLGKYLIFAM 315


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 366 CIYIARYSS*SIVSRRTVGISAILANIHMTKT 271
           C Y+A Y S   V    VG+S  L++    +T
Sbjct: 217 CTYVALYPSSVQVIALGVGVSNFLSSTRTAET 248


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 172 YLIALFRDDLSKCISKTECLSCLK 101
           +++   R+DL +C +K +   CLK
Sbjct: 96  FIVDRLRNDLFECENKEKSNVCLK 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,143
Number of Sequences: 438
Number of extensions: 3598
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)