Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3682
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.31 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 233 NPY*SRINHRYLINLTLFYNNG 168
           N Y +R+N+   +NLT +Y+ G
Sbjct: 126 NDYINRLNYSAFVNLTAYYDGG 147


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 126 CTLTYNKFTFNLIYQKNTHF 67
           CT  Y+  TFN+  ++ T F
Sbjct: 232 CTEPYSDITFNITMRRKTLF 251


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 434 GAKLRRSFQTSFKSINSLP 490
           G  + R+F  S+ S++SLP
Sbjct: 259 GLTVLRTFNASYNSLDSLP 277


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 398 SGSDRPYNFLLIKAIKN 348
           SGS  P+NF+ I  + N
Sbjct: 306 SGSTVPFNFMFIADLNN 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,706
Number of Sequences: 438
Number of extensions: 3883
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)