Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3680
         (353 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    27   0.065
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    26   0.11 
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   1.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   3.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   5.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   7.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 27.1 bits (57), Expect = 0.065
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = -3

Query: 219 KAKVYDTNPRSIEALKENIRREMTSISAVTCR----AVIDNF-RRRLQECRDRNGLHLG 58
           +A  Y  N  + E  K   RR +T  +   C+      ID + RR+ QECR +  L +G
Sbjct: 193 RASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVG 251


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 0.11
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 272 PPRSPDLTPMDFFCGATLR 216
           PP SPDL P D+F   +L+
Sbjct: 270 PPYSPDLAPSDYFLFRSLQ 288


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 183 EALKENIRREMTSISAVTCR----AVIDNF-RRRLQECRDRNGLHLG 58
           E  K   RR +T  +   C+      ID + RR+ QECR +  L +G
Sbjct: 2   EGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECRLKKCLTVG 48


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  SVAITALLQTTSKIVDDCAARHC 138
           S+   + L  +S+ +D CA+++C
Sbjct: 65  SIHEESYLAESSRSIDPCASKYC 87


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 105 RRRLQECRDRNGLH 64
           RRRL++  ++ GLH
Sbjct: 122 RRRLEQLTNQTGLH 135


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 246 RGQIWTTWRPG 278
           RG +W +W  G
Sbjct: 384 RGDLWISWEEG 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,225
Number of Sequences: 438
Number of extensions: 1539
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)