Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3679
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.46 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.3  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 135 VAQEKSSERSYNNREGYGDKQDRSRTEAQWRSTDKSLPV 251
           V  EK S+   +     G K  R+ TEA W S +  + V
Sbjct: 127 VMPEKMSDEKISTLYALGAKIIRTPTEASWHSPEAHISV 165


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 116 RDTEIIINYTLKQI*SLIVNVKLEN 42
           RDT ++ +  LKQI S   NV+L N
Sbjct: 448 RDTCLLASDALKQILSAAYNVELHN 472


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -2

Query: 116 RDTEIIINYTLKQI*SLIVNVKLEN 42
           RDT ++ +  LKQI S   NV+L N
Sbjct: 486 RDTCLLASDALKQILSAAYNVELHN 510


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 338 SWYSWNCPLTNRSTSEDL 285
           S+YS + P  NRS  EDL
Sbjct: 21  SFYSASYPPQNRSQEEDL 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,900
Number of Sequences: 438
Number of extensions: 3392
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)