Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3676
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    25   0.73 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   6.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 23/77 (29%), Positives = 32/77 (41%)
 Frame = +2

Query: 434 FDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPTNNYAYDFYVKVKRCPTPV 613
           F +H    +N IP+  K  I+ L      FF  + +        Y YD  + V      V
Sbjct: 36  FSVHQVYPENLIPRLAKKAIQVLGVTEKEFFDQMGVHFVGFVGQYGYDRVLSV--LGRHV 93

Query: 614 RDWHNYHEQIIDNLIEY 664
           RD+ N     +DNL EY
Sbjct: 94  RDFLNG----LDNLHEY 106


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 108 KDSLLRETTL*CGNRNHSLRNEYIGGLLLSTPSCRI 1
           K SLL+E T+ C    H L+N     L++S  +  I
Sbjct: 379 KQSLLKENTVTCQEAMHMLKNADSQLLVISDDNIHI 414


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 425 KFVFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDL 553
           + V D   +R+DNNI +   I +     KN    ++I L D L
Sbjct: 251 RVVTDTIKYRNDNNIVRPDFINMLMELQKNPQKLENIKLTDSL 293


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +2

Query: 524 FKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQIIDNLIEYDNMY 676
           F +I+ +D+L +  +     + +   P    D H + +  + N+  Y+N Y
Sbjct: 96  FGTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYY 146


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/51 (21%), Positives = 24/51 (47%)
 Frame = +2

Query: 524 FKSITLVDDLPTNNYAYDFYVKVKRCPTPVRDWHNYHEQIIDNLIEYDNMY 676
           F +I+ +D+L +  +     + +   P    D H + +  + N+  Y+N Y
Sbjct: 96  FGTISDLDNLVSAAHEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYY 146


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 467 YCCRIDDCECQ 435
           +CC  D C+C+
Sbjct: 748 HCCDFDACDCE 758


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 138 NTTTCGNPHVKDSL 97
           NT  C NP+ +DSL
Sbjct: 106 NTKNCVNPYDRDSL 119


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 75   CGNRNHSLRNEYIG 34
            CGN +H   N+++G
Sbjct: 1598 CGNFDHDSTNDFVG 1611


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 305 LPNRRLASSVLHDLYCHTTTRLK 237
           L    LAS V ++++C TT   K
Sbjct: 149 LMGANLASEVANEMFCETTIGCK 171


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 418 NKTLF*IVIYNSVV*ILN*IRAFFSNGG 335
           NKT   ++ YN V   LN +     NGG
Sbjct: 79  NKTFLAVIRYNGVPSSLNVVSDKTGNGG 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,819
Number of Sequences: 438
Number of extensions: 4348
Number of successful extensions: 20
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)