Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3674
         (400 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    25   0.42 
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    25   0.42 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   0.56 
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   1.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   1.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   2.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   6.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    20   9.1  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 20  KKGSKSKEILMEFNH*KLS*QLNINSLYFFNWKLYFNFIINSDIPL 157
           ++ SK ++I+   ++  +S   N N+   +N KLY+N      IP+
Sbjct: 73  RERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPV 118


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 24.6 bits (51), Expect = 0.42
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 20  KKGSKSKEILMEFNH*KLS*QLNINSLYFFNWKLYFNFIINSDIPL 157
           ++ SK ++I+   ++  +S   N N+   +N KLY+N      IP+
Sbjct: 311 RERSKERKIISSLSNNYISNISNYNNNNNYNKKLYYNINYIEQIPV 356


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 24.2 bits (50), Expect = 0.56
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 20  KKGSKSKEILMEFNH*KLS*QLNINSLYFFNWKLYFNFIINSDIPL 157
           ++ SK ++I+   ++  +S   N N+   +N KLY+N      IP+
Sbjct: 73  RERSKERKIISSLSNNYISNISNYNNDNNYNKKLYYNINYIEQIPV 118


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 126 KYNFQLKKYN 97
           +YNFQLK YN
Sbjct: 57  RYNFQLKPYN 66


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -2

Query: 126 KYNFQLKKYN 97
           +YNFQLK YN
Sbjct: 58  RYNFQLKPYN 67


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 86  NINSLYFFNWKLYFNFIINSDIPL 157
           N N+   +N KLY+N I    IP+
Sbjct: 325 NNNNYKNYNKKLYYNIINIEQIPV 348


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 107 FNWKLYFNFIINSDIPL 157
           +N KLY+N I    IP+
Sbjct: 108 YNKKLYYNIINIEQIPV 124


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 107 FNWKLYFNFIINSDIPL 157
           +N KLY+N I    IP+
Sbjct: 108 YNKKLYYNIINIEQIPV 124


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 107 FNWKLYFNFIINSDIPL 157
           +N KLY+N I    IP+
Sbjct: 328 YNKKLYYNIINIEQIPV 344


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 92  NSLYFFNWKLYFNF 133
           NS  F N+KLY+ +
Sbjct: 560 NSAVFTNYKLYWRY 573


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,473
Number of Sequences: 438
Number of extensions: 787
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)