Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3668
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              29   0.048
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    29   0.048
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.78 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.6  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 298 SCETIRKNIYFT*N*FSTIGQLRRNIDGDRATVDKFHAF 182
           +CET++  ++ T + +  IG+L+R   GD  +V K   F
Sbjct: 35  NCETLQSEVHITKDEYDEIGRLKRTCSGD-ISVTKCEGF 72


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 29.1 bits (62), Expect = 0.048
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 298 SCETIRKNIYFT*N*FSTIGQLRRNIDGDRATVDKFHAF 182
           +CET++  ++ T + +  IG+L+R   GD  +V K   F
Sbjct: 35  NCETLQSEVHITKDEYDEIGRLKRTCSGD-ISVTKCEGF 72


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.0 bits (52), Expect = 0.78
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 517 LLSCTNQVIINTKH*TIDKSSWQMS 443
           +L   N+VII+ K+  I+K  WQ++
Sbjct: 232 VLHSINKVIIHPKYDIIEKDDWQIN 256


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 23  RSYGWRVGCD 52
           R  GW +GCD
Sbjct: 121 RMIGWEIGCD 130


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 33  GGGSVVTPPGSIPAFFSTYS 92
           GGGS    P S  +FFS+ S
Sbjct: 85  GGGSSSPSPSSPSSFFSSVS 104



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 61  PGGVTTDPPPVRPSS 17
           PGG ++ P P  PSS
Sbjct: 84  PGGGSSSPSPSSPSS 98


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +2

Query: 23  RSYGWRVGCD 52
           R  GW +GCD
Sbjct: 121 RMIGWEIGCD 130


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -2

Query: 118 QLPEGMSTHEYVEKKAGIDPGGVTTDPPPVRPSSN 14
           +L  G S +     +   D G   +D PP   SSN
Sbjct: 246 ELTGGNSGNAAGNNEDSSDSGAAASDRPPASASSN 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,114
Number of Sequences: 438
Number of extensions: 4777
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)