Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3665
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.9  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 579 DFNFRVY-TSQRLSGRERLAGVLVAFMVQQLSVHVGQIHGVIIHDAYFANARPGKVHGSR 403
           DF FR + T  RL+ ++R         V+ LSV    I  + + D +F N +    H + 
Sbjct: 60  DFYFRQFWTDPRLAFKKRTG-------VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIAT 112

Query: 402 TS 397
           TS
Sbjct: 113 TS 114


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 579 DFNFRVY-TSQRLSGRERLAGVLVAFMVQQLSVHVGQIHGVIIHDAYFANARPGKVHGSR 403
           DF FR + T  RL+ ++R         V+ LSV    I  + + D +F N +    H + 
Sbjct: 60  DFYFRQFWTDPRLAFKKRTG-------VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIAT 112

Query: 402 TS 397
           TS
Sbjct: 113 TS 114


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 449 MPISPMPAPARYMAAGHPRPPAPTISTFAEQILTCPSTPMSERR 318
           +P+S +P P++  A GH +      S    Q  T PS   S RR
Sbjct: 368 IPLSAIPEPSKNPAMGHWQMSCVACSPPPRQ--TPPSRKESGRR 409


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 247 SDASKSSVDGCLPKWAIERYSRQILLSDIGVEG 345
           S+ SKS       K      S+ I+LSD G EG
Sbjct: 77  SERSKSRSPDSRDKSNTSNTSKTIILSDKGPEG 109


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 501 VQQLSVHVGQIHGVIIHDAYFANARPGKVHGSRTS 397
           V+ LSV    I  + + D +F N +    H + TS
Sbjct: 19  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,259
Number of Sequences: 438
Number of extensions: 4243
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)