Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3653
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 511 PFTIKPVLEKNIFFEKL 461
           PFT   ++  +IF++KL
Sbjct: 567 PFTTSTIMPSDIFYDKL 583


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 511 PFTIKPVLEKNIFFEKL 461
           PFT   ++  +IF++KL
Sbjct: 567 PFTTSTIMPSDIFYDKL 583


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 339 LGVDWTYPALNDGENTGIL 395
           L + W+YP    G ++G+L
Sbjct: 614 LNIRWSYPGEEMGGSSGVL 632


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 574 IIKNVLQFRNNISIYSEI*NALFI 645
           ++KN   FRN    Y EI N  F+
Sbjct: 105 VVKNDDNFRNISEKYQEIFNGYFL 128


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/46 (23%), Positives = 19/46 (41%)
 Frame = +1

Query: 85  VYHSDRV*KLYSFFFKNNTPMTILLFILNIKKCAMQ*AGFAKANRE 222
           +Y   RV        K   PM +  F ++ ++C +Q   F    R+
Sbjct: 112 LYQDGRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGSFGYTKRD 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,287
Number of Sequences: 438
Number of extensions: 4672
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)