Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3652
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    27   0.12 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    24   1.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    24   1.2  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.1  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 433 GWGCQPEWGELDRPGLWRPTHVEGCHF 513
           GW   PE+ +L RP  WR     G HF
Sbjct: 31  GWNVPPEYSDLVRPH-WRAFPAPGKHF 56


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 107 NTNYYKLYKSTIICLYVFIYIAIIDFYNFFPTK 9
           N NY KLYK+ II +   I + +  +Y  FP +
Sbjct: 110 NNNYKKLYKNYIINIEQ-IPVPVPVYYGNFPPR 141


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 107 NTNYYKLYKSTIICLYVFIYIAIIDFYNFFPTK 9
           N NY KLYK+ II +   I + +  +Y  FP +
Sbjct: 110 NNNYKKLYKNYIINIEQ-IPVPVPVYYGNFPPR 141


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 636 YNIPQTSLYNRIK 674
           YN+P +SLY R K
Sbjct: 598 YNLPYSSLYGRFK 610


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 475 QVCPILPILADSPIHCFP 422
           Q  P +PIL   P++C P
Sbjct: 780 QAIPRIPILPMIPVYCVP 797


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 427 SNGWGCQPEWGEL 465
           SNGW C+  W ++
Sbjct: 375 SNGWICEHRWRQI 387


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/12 (41%), Positives = 7/12 (58%)
 Frame = +3

Query: 552 CHFCCHCYTSCH 587
           C +  HC+  CH
Sbjct: 737 CRYEAHCFALCH 748


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 501 FNMSRPP*TRSVQFSPFWLTAPSIAFPP 418
           + + R P    V  S  WL A  I+ PP
Sbjct: 149 YGVKRTPRRMIVYVSLVWLGAACISLPP 176


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 650 LRDIVPLSDFV 618
           L DI PLSDFV
Sbjct: 181 LYDIAPLSDFV 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,952
Number of Sequences: 438
Number of extensions: 4698
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)