Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3640
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   3.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               21   3.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   3.3  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.3  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 214 NIYLPDFIFVHHSLCYSRIVIPS 282
           NI++PD  FV+    Y  I   S
Sbjct: 92  NIWVPDTFFVNEKQSYFHIATTS 114


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 214 NIYLPDFIFVHHSLCYSRIVIPS 282
           NI++PD  FV+    Y  I   S
Sbjct: 92  NIWVPDTFFVNEKQSYFHIATTS 114


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 314 KFIVVFPRILALGITIR 264
           KF+V+F  IL++ + IR
Sbjct: 3   KFLVIFVYILSVAVIIR 19


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 214 NIYLPDFIFVHHSLCYSRIVIPS 282
           NI++PD  FV+    Y  I   S
Sbjct: 31  NIWVPDTFFVNEKQSYFHIATTS 53


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 23  SHPSWLSLCSPTCPGETGKAF 85
           SH +W+   S T PG     F
Sbjct: 544 SHGNWIYPASMTIPGSNSAVF 564


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,910
Number of Sequences: 438
Number of extensions: 1812
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)