Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3608
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    26   0.24 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    26   0.24 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 202 DNRLNNKKIRNYYLKKICILLDLNFKHVIESSFDK--NHI--VAKLCDATRAK 348
           D+ +N+KK     LK++C+L       +I+  FD   NHI  + K+  +T  K
Sbjct: 20  DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 72


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +1

Query: 202 DNRLNNKKIRNYYLKKICILLDLNFKHVIESSFDK--NHI--VAKLCDATRAK 348
           D+ +N+KK     LK++C+L       +I+  FD   NHI  + K+  +T  K
Sbjct: 3   DHTINSKKTIMRILKEVCVLQANRACILIKDLFDNVHNHIQNIFKIIKSTNEK 55


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/21 (42%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 4   YAPYTHRVDII-NMDQFEQLI 63
           Y PYT RV+I+ ++D+ + L+
Sbjct: 468 YDPYTQRVEILDSVDRLDNLM 488


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 76  LKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIH 201
           +KSL + +    V     S  ++  R   + LT+   ++G+H
Sbjct: 97  IKSLEERERKHAVHKEQLSREQRFLRRRLEQLTNQTGLHGLH 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,887
Number of Sequences: 438
Number of extensions: 2037
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)