Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-3607
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    27   0.11 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.77 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.77 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.77 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 397 HTRHVSSVSTHAAHGSRHSAALLNSPTPIRRSRLRRTSVISSSKVGS 537
           H R  +S ST +     H A+L  +P P +  R R+    S S + S
Sbjct: 538 HRRRANSGSTSSGDDELHRASLSKTPQPPQCPRFRKLDSPSDSGIES 584


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 523 SKVGSRENTLQTAVDERGGPVP 588
           SK G+ ENT+    DE   P P
Sbjct: 362 SKGGTLENTINGRADEEAAPAP 383


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 523 SKVGSRENTLQTAVDERGGPVP 588
           SK G+ ENT+    DE   P P
Sbjct: 362 SKGGTLENTINGRADEEAAPAP 383


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 523 SKVGSRENTLQTAVDERGGPVP 588
           SK G+ ENT+    DE   P P
Sbjct: 300 SKGGTLENTINGRADEEAAPAP 321


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 178 SQTTDKFSRFTW*HRLHIRSCSVYAI 255
           S     + R T  H LH+  C V  I
Sbjct: 82  SFNAQSWQRLTSLHELHVHGCKVLRI 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,386
Number of Sequences: 438
Number of extensions: 3006
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)